Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02251 ATGGACTCAAACCTTTTGCACCGTCAAGTTGCCTACACGAAGAGGTGCCTTTTTGAGCAGGGTTATCTTGATCGTGATCAATTCACTCAGCTTGAAGAACTGCAGGATGATACTAACCCAAATTTTGCTGAAGAAATTGTGTCTTTATTCTACAATGATTCAGCCAGACTCATACGAAGCATTGAACAAACCATGGCCAGTAAGCCTACCGATTTTGAAAAGCTTGACAACGACATGCACCAGTTCAAGGGTAGTAGCTCAAGCATTGGAGCCAATAGGGTGACAGATGCATGTTCACAATTCAGAGAATACTGCTTGGCAGGAAATCTTGAAGGATGCACAAGGAGTTTCCAGCAAGTGAAACAAGAGCACGAAATTCTGAAGAAGAAGCTTGATACCTATTTCCAGCTAGTTAGACAAGCTGGGAAAGGTTGA 435 42.76 MDSNLLHRQVAYTKRCLFEQGYLDRDQFTQLEELQDDTNPNFAEEIVSLFYNDSARLIRSIEQTMASKPTDFEKLDNDMHQFKGSSSSIGANRVTDACSQFREYCLAGNLEGCTRSFQQVKQEHEILKKKLDTYFQLVRQAGKG* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20189400 20191767 - CsaV3_2G030700.1 Csa02g02251 520308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02251 144 CDD HPT 44 123 IPR008207 GO:0000160
Csa02g02251 144 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 19 140 IPR036641 GO:0000160
Csa02g02251 144 Pfam Hpt domain 45 127 IPR008207 GO:0000160
Csa02g02251 144 PANTHER - 3 142 IPR045871 GO:0000160|GO:0009927|GO:0043424
Csa02g02251 144 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 2-LIKE 3 142 - -
Csa02g02251 144 Gene3D HPT domain 2 143 IPR036641 GO:0000160
Csa02g02251 144 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 39 134 IPR008207 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02251 K14490 AHP; histidine-containing phosphotransfer peotein - csv:101219195 293.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02251 Csa-Chr2:20189400 Csa03g02360 Csa-Chr3:21328537 7.04E-52 dispersed
Csa02g02251 Csa-Chr2:20189400 Csa07g02440 Csa-Chr7:22302514 2.33E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g10 . . . . . . . . . . . . . . Sed02g1237 Cpe07g00202 . Bhi04g00872 Tan02g2543 Cmetu02g0241 . . . . . . . . . . . . . . . . . . . . . . Bda13g01323 . . . Bma02g00080 . . . . Cma12g00238 . . . . . . . . . . . Cla08g01206 Cam08g1667 Cec08g1245 Cco08g1363 Clacu08g1365 . Cre08g1150 . Csa02g02251 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001289 2 6 0 1 2 1 3 1 1 1 2 1 3 3 3 4 1 3 3 1 3 2 2 3 2 3 3 7 5 3 75