Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02252 ATGGAAGACCAAAGGCTGTTGGAGAGAGAGAGGCACCAGATCGAGCAGATTCTTCAGCTTGATAATGAGGAGTTACAAGTTGAAGAAGTTGATTACCTCCATGACTCAGATGATGATGATAATGATGATCGCGATGCTATTAATGGTCATGGTGGTACTGAGGCCTTTCCTGAATTTACTTTCAATTCCTCTTTGGCATCTTTGCATACGTATCTTGGTGAGGTTGAAGATGCTCATCACAGAATGGCTTTCTTGGATGGGGGTGCCATCCTGAACCTACCTGTATTTTATCTTGAAGGTGTTGTGTTGTTCCCAGAAGCCACTCTACCTCTGAGGGTGATACAATCAAATTTTATTGCAGCCATTGAGAGAGTGTTGACTCACTTTGACACCCCTAATACTATAGGTGTGGTTCATGTCTCCTTGGATTCTGATAGTGAAAGACTACGTTTTGCCAATATTGGGACAACTGCAGAGATTCGGCAGTTTCGAAGGTTGGAGGATGGTTCACTTAATGTTCTTGCCAGAGGGAAGCAACGGTTTCGTCTTAGACGTCGTTGGATTGATGTTGAGGGAGTGCCATGTGGAGAAGTTCAAATTATCCAGGAAGATTTGCCATTAAGGGCTCCACGGGATGCTTTTGGAGAATTGGCTCCTAGGAGTACTGTTCAGCGGCACGGTCTCTCATGTGCATTGGCTTCATATACTCCTTGCTCTAGATCATTTACGTCCAGGGATGAGGAGGATGATTCTGCCTCTAATTCAGAGGAAAGCTTTGAACGTGAGCTTTCATTGAGAGAGAAGAAAATCCACAATGCAGCAATTGATTCCAGTGAATCTTGTAGCGATGAGGAGATGTCTGGATCGGAGGCAGAACACCAACATTCGATGTCACATCTAAATGACTCTGATTCTTTAGGGTCAATGCATTCCGATTGCGAGAAGGAAAATGAGAAACCTGCCTCTGACATTGGAAAGAGTTCCACATCAGCTAGGGAATCTAGCGAGAGCAAAGAACTCAAAAGATGCCGAAGAAACTCAAGTTTTAATCCGATGCACAGGGTTTCAAAAGCATTTTGGCCATATTGGGTTTACTCAATGTATGATTCATATTGTCTTGCTCAAAAAGCCGCAGCTATGTGGAAGCAGATAGTGGGGGCGCCAAACATGGATGGTTTTGTGAAGAATCCAGACATCTTATCTTTCTATATTGCTAGTAAGATTCCAGTTTCTGAATCTACTAGACAAGAGCTTTTGGAGATTGATGGCATTTCATATAGATTGCGTCGGGAAATTGAATTACTCAAGTCTATTGATATCATCCAATGTAAAAACTGCAAGACAGTTATAGCCAAGCACAGTGATATGTTGGTGATGCCTAATGAAGGTCCGTTCGGTGCTTACGTGAACCCCCATGGTTATGTTCATGAAATAATGACTCTTTATAGAGCAAATGGCTTAGCACTCAGAGGACGAGCTCAGACAGAATATAGTTGGTTCCCTGGATACGCGTGGACAATCTCAATCTGTGCAACTTGTGAAACTCAATTAGGATGGCTTTTTACTGCCACAAATAGGAATCTGAAACCCAAATCGTTTTGGGGAATACGATGTTCCCAGCTAGCGGATGCCACACGTTGA 1641 43.14 MEDQRLLERERHQIEQILQLDNEELQVEEVDYLHDSDDDDNDDRDAINGHGGTEAFPEFTFNSSLASLHTYLGEVEDAHHRMAFLDGGAILNLPVFYLEGVVLFPEATLPLRVIQSNFIAAIERVLTHFDTPNTIGVVHVSLDSDSERLRFANIGTTAEIRQFRRLEDGSLNVLARGKQRFRLRRRWIDVEGVPCGEVQIIQEDLPLRAPRDAFGELAPRSTVQRHGLSCALASYTPCSRSFTSRDEEDDSASNSEESFERELSLREKKIHNAAIDSSESCSDEEMSGSEAEHQHSMSHLNDSDSLGSMHSDCEKENEKPASDIGKSSTSARESSESKELKRCRRNSSFNPMHRVSKAFWPYWVYSMYDSYCLAQKAAAMWKQIVGAPNMDGFVKNPDILSFYIASKIPVSESTRQELLEIDGISYRLRREIELLKSIDIIQCKNCKTVIAKHSDMLVMPNEGPFGAYVNPHGYVHEIMTLYRANGLALRGRAQTEYSWFPGYAWTISICATCETQLGWLFTATNRNLKPKSFWGIRCSQLADATR* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20195595 20200786 + CsaV3_2G030710.1 Csa02g02252 520309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02252 546 MobiDBLite consensus disorder prediction 256 274 - -
Csa02g02252 546 Gene3D - 369 433 - -
Csa02g02252 546 Gene3D - 73 201 IPR046336 -
Csa02g02252 546 PANTHER CEREBLON 1 542 - -
Csa02g02252 546 SMART lon_5 92 437 IPR003111 -
Csa02g02252 546 ProSiteProfiles CULT domain profile. 438 545 IPR034750 -
Csa02g02252 546 Gene3D Peptide methionine sulfoxide reductase. 434 546 - -
Csa02g02252 546 ProSiteProfiles Lon N-terminal domain profile. 93 437 IPR003111 -
Csa02g02252 546 MobiDBLite consensus disorder prediction 308 322 - -
Csa02g02252 546 MobiDBLite consensus disorder prediction 240 343 - -
Csa02g02252 546 PANTHER BNAA09G40760D PROTEIN 1 542 - -
Csa02g02252 546 SUPERFAMILY PUA domain-like 92 436 IPR015947 -
Csa02g02252 546 CDD CRBN_C_like 441 541 IPR034750 -
Csa02g02252 546 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 440 535 IPR004910 -
Csa02g02252 546 Pfam ATP-dependent protease La (LON) substrate-binding domain 92 436 IPR003111 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02252 K11793 CRBN; cereblon - csv:101218954 1054.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g8 . . . . . . . . . . . . . Car12g00223 Sed01g1255 Cpe07g00203 . Bhi04g00871 Tan02g2544 Cmetu03g1530 . . . Lcy13g1434 . . . . . . . . . . . . . . . . Blo18g00311 Bda01g00940 . . . . . . . . . Cma12g00240 . . . . . . . . . . . Cla08g01207 Cam08g1669 Cec08g1247 Cco08g1364 Clacu08g1366 . Cre08g1151 . Csa02g02252 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009150 1 2 1 0 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 34