Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02253 ATGCTCTTCTTCCTCCGACATCAATATCTGAGAAACTTGGTGTGTAGAGGAAGGAGATTTGAGATTGAAGCTTTGGGATCAATGGAGAGTTCAATGAAGAAGACAATGAGCAACGGTAGTGTTCATATGGACATGGAAGAAATTGACAATAAGTTTGAAGAAGCCTATGGAGAACACAATGCTACTGAAGATCAGCTCATTACTCCTTGGACAGTCTCTGTTGCTAGTGGTTATTCTTTACTGCGTGATCCGATCTACAACAAAGGCCTCGCCTTTAGTGAAAAAGAAAGAGATGCTCATTACTTGCGTGGCTTGTTGCCACCAGCAGTTATTGATCAAGAGCTTCAGGAAAGGAGGATGATGCATAATCTTCGCAACTATGAAGTTCCACTACACAGATATATTGCCATGATGGATCTTCAGGAGAGAAATGAAAGGTTGTTCTACAAGCTTCTCATTGATAATGTTGAAGAACTGCTTCCAATTGTGTACACTCCAACCGTAGGCGAAGCTTGCCAGAAGTATGGGAGCGTTTATAGACGACCTCAAGGCCTTTTCATCAGTTTGAAAGAGAAGGGCAAGATTCTTGAAGTTTTGAAGAACTGGCCAGAAAGGAACATTCAAGTTATTGTTGTTACCGACGGTGAGCGGATTCTAGGCCTTGGGGATCTTGGATGCCAGGGCATGGGGATTCCTGTGGGGAAACTTTCTTTATATACAGCACTTGGAGGAATTCGACCCTCAGCTTGCTTGCCTATAACCATTGATGTTGGTACAAACAACGAGCAGCTTCTAAATGATGAGTTTTACATTGGCCTTCGGCAGAAACGGGCCAGAGGACAGGAATACATGGAACTTTTAGACGAGTTCATGTATGCAGTAAAGAAGAACTACGGAGAGAAAGTCCTTATACAGTTTGAAGATTTTGCAAACCACAATGCATTCGAGTTGCTTTCAAGATATAGCTCGTCACACCTTGTGTTCAATGACGACATTCAAGGTACAGCATCTGTTGTTGTAGCAGGACTACTTGCAGCTCTTAAACTTATTGGAGGGACATTAGCTGACCACACTTTCTTATTCCTTGGAGCTGGAGAGGCTGGAACTGGTATAGCTGAGCTTATTGCTTTGGAGATTTCAAAACAGACTGGAGCTCCAACTGAAGAGACTCGCAAGAAGATTTGGCTCGTGGACTCGAAGGGGCTGATCGTTCAATCCCGCTTCGAATCCCTTCAACATTTTAAGAAGCCTTGGGCTCATGACCATGAATCTATCAAGGATCTTTACGGTGCCGTCCAGGCTATCAAACCAACAGTGTTGATAGGAACATCTGGTGTTGGGAAGACATTTACAAAGGAAGTTGTGGAGGCCATGGCATCCTTCAATGAGAAACCACTTATCCTTGCTCTCTCGAACCCTACGTCACAATCGGAGTGTACAGCTGAAGAAGCTTATACATGGAGCCAGGGACGAGCAATCTTTGCTAGCGGAAGTCCATTTGACCCTGTTGAATATGATGGAAAAGTTTTTGTGCCTGGCCAGGCAAACAATGCTTACATATTCCCTGGATTTGGCTTGGGTCTGATCATGTCGGGTACAATTCGTGTACATGACGACATGCTCTTGGCAGCCTCGGAGGCTCTGGCTGCCCAAGTGAGTCAGGAAAACTATGATAAGGGCTTGATTTACCCTCCTTTTACCAACATCAGAAAGATATCTGCTAACATTGCTGCCAAAGTTGCTGCTAAGGCTTATGAACTTGGTCTGGCTTCTCGTCTTCCTCGACCAAAGGATCTCGTAAAATTTGCCGAGAGCTGCATGTACAGCCCCCGCTATCGTAGCTACCTTTAA 1851 44.52 MLFFLRHQYLRNLVCRGRRFEIEALGSMESSMKKTMSNGSVHMDMEEIDNKFEEAYGEHNATEDQLITPWTVSVASGYSLLRDPIYNKGLAFSEKERDAHYLRGLLPPAVIDQELQERRMMHNLRNYEVPLHRYIAMMDLQERNERLFYKLLIDNVEELLPIVYTPTVGEACQKYGSVYRRPQGLFISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRARGQEYMELLDEFMYAVKKNYGEKVLIQFEDFANHNAFELLSRYSSSHLVFNDDIQGTASVVVAGLLAALKLIGGTLADHTFLFLGAGEAGTGIAELIALEISKQTGAPTEETRKKIWLVDSKGLIVQSRFESLQHFKKPWAHDHESIKDLYGAVQAIKPTVLIGTSGVGKTFTKEVVEAMASFNEKPLILALSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDMLLAASEALAAQVSQENYDKGLIYPPFTNIRKISANIAAKVAAKAYELGLASRLPRPKDLVKFAESCMYSPRYRSYL* 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20201532 20206811 - CsaV3_2G030720.1 Csa02g02253 520310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02253 616 Pfam Malic enzyme, NAD binding domain 332 584 IPR012302 GO:0051287
Csa02g02253 616 Gene3D - 330 616 - -
Csa02g02253 616 Coils Coil 45 65 - -
Csa02g02253 616 PIRSF ME 33 616 IPR001891 GO:0004470|GO:0004471
Csa02g02253 616 PRINTS Malic enzyme signature 147 171 IPR001891 GO:0004470|GO:0004471
Csa02g02253 616 PRINTS Malic enzyme signature 207 236 IPR001891 GO:0004470|GO:0004471
Csa02g02253 616 PRINTS Malic enzyme signature 243 265 IPR001891 GO:0004470|GO:0004471
Csa02g02253 616 PRINTS Malic enzyme signature 303 321 IPR001891 GO:0004470|GO:0004471
Csa02g02253 616 PRINTS Malic enzyme signature 328 344 IPR001891 GO:0004470|GO:0004471
Csa02g02253 616 PRINTS Malic enzyme signature 359 375 IPR001891 GO:0004470|GO:0004471
Csa02g02253 616 PRINTS Malic enzyme signature 462 478 IPR001891 GO:0004470|GO:0004471
Csa02g02253 616 SMART malic_2 141 322 IPR012301 GO:0004471
Csa02g02253 616 SMART Malic_M_2 332 585 IPR012302 GO:0051287
Csa02g02253 616 PANTHER MALIC ENZYME 29 615 - -
Csa02g02253 616 PANTHER MALIC ENZYME-RELATED 29 615 - -
Csa02g02253 616 Pfam Malic enzyme, N-terminal domain 141 321 IPR012301 GO:0004471
Csa02g02253 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 332 615 IPR036291 -
Csa02g02253 616 Gene3D - 75 329 IPR037062 GO:0004471
Csa02g02253 616 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 54 331 IPR046346 -
Csa02g02253 616 CDD NAD_bind_1_malic_enz 332 610 - -
Csa02g02253 616 ProSitePatterns Malic enzymes signature. 328 344 IPR015884 GO:0004471
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02253 K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] - csv:101218724 1205.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02858 Csa-Chr1:25140474 Csa02g02253 Csa-Chr2:20201532 0 dispersed
Csa02g02253 Csa-Chr2:20201532 Csa07g02443 Csa-Chr7:22324267 0 dispersed
Csa02g02253 Csa-Chr2:20201532 Csa03g02361 Csa-Chr3:21332518 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000336 4 5 1 2 4 4 7 4 4 4 4 4 7 4 3 7 4 5 8 4 4 4 4 4 2 4 4 7 9 4 135