Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02256 ATGCAAAAGTTAGAACTCATCTCGGGAGTCAAAGTCAAATCCGACGAACCCCCCACTCAATCCCCACAACCCACGGCCACCCGAAGCGCAGCAGCAATTTTCAAACCGGAAATTGTTTCCGTTCCGGCTAAAGCCCGCAGCAAACGCTCACGTGCCCTCCCATCTAATTGGAACAACTCCGCCCTCCTTCCTCTTTCTTCTCCCACTGCCGAATCCGAAACTACACCACCCATCGAACAACCACATCCCATTAAAAAAACCCTTCCCAAGGCGGCAGCTACGGCTAAGAAGAAGGACAGTCCAGACTTAGGATTTTCATCCGGAGAGGGGCGTAAGTGCATGCACTGCGCCACCGACAAGACACCCCAGTGGCGGACTGGCCCAATGGGCCCAAAAACATTGTGTAATGCTTGTGGGGTTCGGTACAAATCCGGCCGCTTGGTTCCGGAGTATCGCCCTGCCGCAAGCCCCACCTTTGTTTTAACCAAACACTCTAATTCTCATCGGAAAGTTTTGGAGCTTCGACGACAAAAGGAGATTCTTAGAGCCCAACAACAGCAACCACAGCATTTGCTTTTGGATCATCGTCAGGATATGATCTTTGATGCATCAAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCAGATTTCCGGCAGCTGATCTGA 672 51.04 MQKLELISGVKVKSDEPPTQSPQPTATRSAAAIFKPEIVSVPAKARSKRSRALPSNWNNSALLPLSSPTAESETTPPIEQPHPIKKTLPKAAATAKKKDSPDLGFSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEILRAQQQQPQHLLLDHRQDMIFDASNGDDYLIHQHVGPDFRQLI* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20219711 20221965 - CsaV3_2G030750.1 Csa02g02256 520313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02256 223 MobiDBLite consensus disorder prediction 51 76 - -
Csa02g02256 223 MobiDBLite consensus disorder prediction 43 108 - -
Csa02g02256 223 Pfam GATA zinc finger 113 146 IPR000679 GO:0006355|GO:0043565
Csa02g02256 223 Gene3D - 106 157 IPR013088 GO:0006355|GO:0008270
Csa02g02256 223 PANTHER GATA TRANSCRIPTION FACTOR 1 223 - -
Csa02g02256 223 ProSitePatterns GATA-type zinc finger domain. 113 138 IPR000679 GO:0006355|GO:0043565
Csa02g02256 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 171 - -
Csa02g02256 223 SMART GATA_3 107 157 IPR000679 GO:0006355|GO:0043565
Csa02g02256 223 MobiDBLite consensus disorder prediction 1 31 - -
Csa02g02256 223 CDD ZnF_GATA 112 159 IPR000679 GO:0006355|GO:0043565
Csa02g02256 223 PANTHER GATA TRANSCRIPTION FACTOR 1 223 - -
Csa02g02256 223 MobiDBLite consensus disorder prediction 14 28 - -
Csa02g02256 223 ProSiteProfiles GATA-type zinc finger domain profile. 107 143 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g02256 Csa03g04547 CCT
Csa02g02256 Csa03g04547 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02256 Csa-Chr2:20219711 Csa03g02372 Csa-Chr3:21540331 2.00E-60 dispersed
Csa02g02256 Csa-Chr2:20219711 Csa03g04547 Csa-Chr3:39639474 4.83E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31020 PF00320 GATA 9.50E-16 CL0167 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02256 - - csv:101205219 433.335