Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02262 ATGCCTGACCTCCCTCGCAATCCACTCACGACTCGGTCATTCCAACTTCCGCTTCCGATTGCCCACAAAACACCCATTAAGTTAACTCTAACAACACGCCACCCATCCCAACCCGCTAAAGGGAGTGGTGGGAAGAGTATTGAGGAGGGGAAAGACGCGATCGGTGCCGATGGTGATAGGGATTTTGTGAACCCTGGAATCGGTTTTGAAACAAAGGTACTACCTGAGAGTAAAGACGAAGTTGGGAAGGAGGAAGAGGTAGGGATAGTTGGTGTTGGAGGTATGGATGAGTTTGATAGCGGTGGAAAGAACGGTGATAAGGGTCCTGTAGCTGAAGATGAAGGCACGACTACTCCTCTTCCTGAGAAGGTTCAGGTTGGTGGTTCTCCATTGTATAAAGTTGAAAGAAAACTGGGAAAAGGAGGTTTTGGTCAGGTGTATGTGGGTCGACGATTGGGTCCCATGAGTTTGAATGAAAGATCTGGCCCTGGAGCTGTGGAGGTAGCCTTAAAATTTGAGCATAGAAGTAGTAAAGGGTGCAACTATGGACCTCCTTACGAGTGGCAGGTTTACAATGCATTAGGTGGCAGTCATGGTGTGCCACGAGTTCACTACAAGGGTCGGCAAGGTGACTATTATGTCATGGTTATGGACATGCTTGGACCTAGTCTCTGGGATGTCTGGAATAACAATGCTCACACGATGTCAATTGAAATGGTAGCATGTATCGCCATTGAGGCAATCTCCATATTAGAGAAGATGCATTCTAGAGGGTACGTGCATGGTGATGTGAAGCCTGAAAATTTTCTACTTGGTCCTCCAGGAACCCCAGAAGAGAAAAAATTGTTTCTTGTAGATCTTGGTTTAGCAACCAAGTGGCGAGATAGTTCGACTGGACAACATGTTGAGTATGATCAACGACCAGACGTTTTCCGGGGAACAGTTCGGTATGCTAGTGTGCATGCACATCTTGGCAGAACTGCTAGTCGGAGAGATGACTTGGAATCGCTTGCTTACACTCTTGTTTTTCTTCTCCGTGGTCGGCTGCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTGTCAAAGAAAAAGATGGCTACTTCCTCTGAAACATTGTGCTGTTTTTGCCCTCAGCCTTTTAGACAGTTTGTTGAGTACGTCGTCAACTTGAAATTTGATGAAGAGCCAAACTATGCAAGATATATCTCCCTCTTTGATGGGATTGTCGGTCCAAATCCAGATATCCGTCCAATAAACACAGATGGTGCACAGAAACTTATATTTCAGGTTGGGCATAAGAGAGGAAGGCTATCCATGGAGGATGAAGATGATGAACAACCAAAGAAGAAGGTTCGGATGGGGATGCCTGCAACCCAATGGATTAGTGTTTATAATGCCCGTAGACCAATGAAACAAAGATACCACTATAACGTTGCTGATATGAGGCTCTCTCAGCATATTGAGAAGGGGAATGAAGATGGTTTATTTATTAGTTGCGTTGCTTCATGTTCAAACCTTTGGGCCCTTATTATGGATGCTGGAACTGGCTTTTCTGCCCAAGTTTATGAACTCTCACCCTACTTTCTTCACAAGGAGTGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTGCAATAGCAGGGGCTAATAATGGAAGCTCATTGGTAGTGATGTCCAAAGGGACACAGTACCTCCAGCAATCCTATAAAGTCAGTGATTCATTTCCCTTCAAGTGGATAAATAAGAAGTGGAGGGAGGGATTTTACGTTACAGCCATGGCCACTGCTGGTGGTAGATGGGCAATTGTCATGTCACGTGGTGCAGGATTTTCTGACCAGGTTGTGGAACTAGATTTCCTATATCCCAGTGAAGGCATTCATCGCAGGTGGGATAATGGTTACCGCATCACATCAACTGCAGCAACTTTGGACCAGGCTGCTTTTGTTCTGAGTGTGCCAAGGAGAAAGCCTGCTGATGAAACTCAAGAAACACTCCGTACATCTGCCTTTCCTAGTACACATGTGAAGGAGAAATGGGCAAAGAATCTTTATATTGCATCTATTTGCTATGGCCGAACTGTTTCATGA 2100 45.19 MPDLPRNPLTTRSFQLPLPIAHKTPIKLTLTTRHPSQPAKGSGGKSIEEGKDAIGADGDRDFVNPGIGFETKVLPESKDEVGKEEEVGIVGVGGMDEFDSGGKNGDKGPVAEDEGTTTPLPEKVQVGGSPLYKVERKLGKGGFGQVYVGRRLGPMSLNERSGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNAHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPEEKKLFLVDLGLATKWRDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVSKKKMATSSETLCCFCPQPFRQFVEYVVNLKFDEEPNYARYISLFDGIVGPNPDIRPINTDGAQKLIFQVGHKRGRLSMEDEDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISCVASCSNLWALIMDAGTGFSAQVYELSPYFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGGRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATLDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20244647 20249330 + CsaV3_2G030810.1 Csa02g02262 520319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02262 699 MobiDBLite consensus disorder prediction 92 125 - -
Csa02g02262 699 Gene3D Transferase(Phosphotransferase) domain 1 110 455 - -
Csa02g02262 699 Pfam Protein kinase domain 132 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02262 699 ProSiteProfiles Protein kinase domain profile. 132 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02262 699 ProSitePatterns Protein kinases ATP-binding region signature. 138 171 IPR017441 GO:0005524
Csa02g02262 699 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 100 673 - -
Csa02g02262 699 MobiDBLite consensus disorder prediction 1 63 - -
Csa02g02262 699 CDD STKc_CK1 132 408 - -
Csa02g02262 699 PANTHER CASEIN KINASE-RELATED 100 673 - -
Csa02g02262 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Csa02g02262 699 SUPERFAMILY Protein kinase-like (PK-like) 132 414 IPR011009 -
Csa02g02262 699 SMART serkin_6 132 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02262 - - - csv:101218249 1413.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01054 Csa-Chr2:10223262 Csa02g02262 Csa-Chr2:20244647 2.04E-57 dispersed
Csa02g02262 Csa-Chr2:20244647 Csa07g02444 Csa-Chr7:22331098 0 dispersed
Csa02g02262 Csa-Chr2:20244647 Csa03g01201 Csa-Chr3:9281415 1.81E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g4 Blo01g01484 . . . . . . Bma01g02238 . . Cma01g01777 Cma05g00116 . Car12g00229 . Cpe07g00209 . . . . . . . . . . . . . . . Cone20ag1268 Cone17ag0142 Cone16ag0715 Cone2ag0316 . . . . . . . . . . Bma01g00959 . . . . . Cma12g00246 Car01g01370 Car05g00100 Cpe11g00096 Cpe02g00508 . . . . . . . . . . . . . . . Csa02g02262 . .
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77924 PF00069 Pkinase 8.10E-16 CL0016 Csa PK