Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02269 | ATGAGAAATTGGGGGAAATGGGTATCGGAAATTCGAGAACCAAGAAAGAAATCCCGCATTTGGTTAGGTACTTTCCCCAGTCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATCAAAGGAAATTCCGCCATTCTTAATTTCCCTGATCTTGTTCATCTTCTTCCTCGTCCTGTTTCTCTTGCGCCTCGTGATGTTCAAGCTGCTGCTGCTAAAGCTGCCCACATGCATAATCTTTCATCTAATGCTAATACTAACAACCACAATACTAATTCTAATTCCTCCTCTGCCTTTTCCGATGAACTTAGTGAGATTGTTGAGTTGCCGGCTCTGGGAACGAGTTACGACGAGGGTGTTGGTGTTGGTGGGGAGTTTGTGTTTGTTGAGTCGGAATTGGAATCGGCGGCTTGGCTTTACCCGCCGCCGTGGGTGCAGAGCTTAGAGGAGGATTATGATGATGGAGATGGAGATGGAGATTGTGTGTTACTGTTGAAATGA | 507 | 46.15 | MRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDEGVGVGGEFVFVESELESAAWLYPPPWVQSLEEDYDDGDGDGDCVLLLK* | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 20317603 | 20318401 | - | CsaV3_2G030880.1 | Csa02g02269 | 520326 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02269 | 168 | CDD | AP2 | 1 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g02269 | 168 | Pfam | AP2 domain | 3 | 44 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g02269 | 168 | PANTHER | DREB-LIKE PROTEIN | 1 | 98 | - | - | |
Csa02g02269 | 168 | PANTHER | DREB-LIKE PROTEIN | 102 | 163 | - | - | |
Csa02g02269 | 168 | SMART | rav1_2 | 1 | 58 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g02269 | 168 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 102 | 163 | - | - | |
Csa02g02269 | 168 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 1 | 98 | - | - | |
Csa02g02269 | 168 | Gene3D | AP2/ERF domain | 1 | 53 | IPR036955 | GO:0003700|GO:0006355 | |
Csa02g02269 | 168 | SUPERFAMILY | DNA-binding domain | 2 | 53 | IPR016177 | GO:0003677 | |
Csa02g02269 | 168 | ProSiteProfiles | AP2/ERF domain profile. | 1 | 52 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02269 | Csa-Chr2:20317603 | Csa03g02368 | Csa-Chr3:21466638 | 6.86E-40 | dispersed | |
Csa02g02269 | Csa-Chr2:20317603 | Csa03g04550 | Csa-Chr3:39659241 | 1.94E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31022 | PF00847 | AP2 | 2.60E-10 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02269 | K09286 | - | csv:101206242 | 246.128 |