Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02269 ATGAGAAATTGGGGGAAATGGGTATCGGAAATTCGAGAACCAAGAAAGAAATCCCGCATTTGGTTAGGTACTTTCCCCAGTCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATCAAAGGAAATTCCGCCATTCTTAATTTCCCTGATCTTGTTCATCTTCTTCCTCGTCCTGTTTCTCTTGCGCCTCGTGATGTTCAAGCTGCTGCTGCTAAAGCTGCCCACATGCATAATCTTTCATCTAATGCTAATACTAACAACCACAATACTAATTCTAATTCCTCCTCTGCCTTTTCCGATGAACTTAGTGAGATTGTTGAGTTGCCGGCTCTGGGAACGAGTTACGACGAGGGTGTTGGTGTTGGTGGGGAGTTTGTGTTTGTTGAGTCGGAATTGGAATCGGCGGCTTGGCTTTACCCGCCGCCGTGGGTGCAGAGCTTAGAGGAGGATTATGATGATGGAGATGGAGATGGAGATTGTGTGTTACTGTTGAAATGA 507 46.15 MRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDEGVGVGGEFVFVESELESAAWLYPPPWVQSLEEDYDDGDGDGDCVLLLK* 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20317603 20318401 - CsaV3_2G030880.1 Csa02g02269 520326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02269 168 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Csa02g02269 168 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
Csa02g02269 168 PANTHER DREB-LIKE PROTEIN 1 98 - -
Csa02g02269 168 PANTHER DREB-LIKE PROTEIN 102 163 - -
Csa02g02269 168 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Csa02g02269 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 102 163 - -
Csa02g02269 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 98 - -
Csa02g02269 168 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Csa02g02269 168 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Csa02g02269 168 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02269 Csa-Chr2:20317603 Csa03g02368 Csa-Chr3:21466638 6.86E-40 dispersed
Csa02g02269 Csa-Chr2:20317603 Csa03g04550 Csa-Chr3:39659241 1.94E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31022 PF00847 AP2 2.60E-10 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02269 K09286 - csv:101206242 246.128