Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02273 | ATGGCCAAAATTGCAATTGGAAGCATCCATGAGGCCTCCCAGCCCGATTGCATCCGAGCCCTCATCGTTGAGTTCATTGTCACTTTTCTTTTCGTCTTTGCTGGTGTCGGATCAGCCATGGCTGCCAATGCATTATTGGCAAACGCACTCGTCGGTTTATTCGCCGTAGCAGTTGCACATGCGTTTGTTGTGGCTGTGATGATCTCTACTGGCCACATTTCCGGTGGCCACCTCAACCCTGCTGTCACTCTTGGTCTACTTTTCGGTGGCCACATCACAGTCGTTCGATCTGCTCTATATTGGATTATTCAGTTGCTAGCAGCATCAGCTGCCAGCTTCTTGTTAACGTACCTCACCGGAGGCTTGGTCACTCCAATTCACACGTTAGCAAGTGGGGTTGGGTATCTTCAGGGAGTGATATGGGAGATTATTCTGACCTTCTCCTTGCTTTTCACTGTGTATGGTACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCATTGCTGACTGGGTTTGTGGTAGGGGCCAACATCTTGGCTGGTGGAGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCTGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAACTTCCTCATTCAAAGATCTCATGTCCCTCTACCTAGGGAGGAAGATGGCTATTAG | 744 | 49.6 | MAKIAIGSIHEASQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANALVGLFAVAVAHAFVVAVMISTGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLTYLTGGLVTPIHTLASGVGYLQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFLIQRSHVPLPREEDGY* | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 20340077 | 20342014 | - | CsaV3_2G030920.1 | Csa02g02273 | 520330 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02273 | 247 | ProSitePatterns | MIP family signature. | 77 | 85 | IPR022357 | - | |
Csa02g02273 | 247 | SUPERFAMILY | Aquaporin-like | 11 | 241 | IPR023271 | - | |
Csa02g02273 | 247 | PANTHER | AQUAPORIN-8 | 2 | 245 | IPR034294 | - | |
Csa02g02273 | 247 | PANTHER | AQUAPORIN TIP4-1 | 2 | 245 | - | - | |
Csa02g02273 | 247 | PRINTS | Major intrinsic protein family signature | 19 | 38 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa02g02273 | 247 | PRINTS | Major intrinsic protein family signature | 59 | 83 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa02g02273 | 247 | PRINTS | Major intrinsic protein family signature | 96 | 115 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa02g02273 | 247 | PRINTS | Major intrinsic protein family signature | 141 | 159 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa02g02273 | 247 | PRINTS | Major intrinsic protein family signature | 174 | 196 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa02g02273 | 247 | PRINTS | Major intrinsic protein family signature | 211 | 231 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa02g02273 | 247 | Gene3D | Glycerol uptake facilitator protein. | 2 | 242 | IPR023271 | - | |
Csa02g02273 | 247 | Pfam | Major intrinsic protein | 12 | 228 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02273 | Csa-Chr2:20340077 | Csa07g02263 | Csa-Chr7:21111287 | 2.66E-83 | dispersed | |
Csa02g02273 | Csa-Chr2:20340077 | Csa06g02624 | Csa-Chr6:23064934 | 2.48E-82 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02273 | K09873 | - | csv:101205380 | 447.588 |