Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02273 ATGGCCAAAATTGCAATTGGAAGCATCCATGAGGCCTCCCAGCCCGATTGCATCCGAGCCCTCATCGTTGAGTTCATTGTCACTTTTCTTTTCGTCTTTGCTGGTGTCGGATCAGCCATGGCTGCCAATGCATTATTGGCAAACGCACTCGTCGGTTTATTCGCCGTAGCAGTTGCACATGCGTTTGTTGTGGCTGTGATGATCTCTACTGGCCACATTTCCGGTGGCCACCTCAACCCTGCTGTCACTCTTGGTCTACTTTTCGGTGGCCACATCACAGTCGTTCGATCTGCTCTATATTGGATTATTCAGTTGCTAGCAGCATCAGCTGCCAGCTTCTTGTTAACGTACCTCACCGGAGGCTTGGTCACTCCAATTCACACGTTAGCAAGTGGGGTTGGGTATCTTCAGGGAGTGATATGGGAGATTATTCTGACCTTCTCCTTGCTTTTCACTGTGTATGGTACAATTGTTGACCCAAAAAAGGGGGCTCTTGATGGGCTGGGTCCATTGCTGACTGGGTTTGTGGTAGGGGCCAACATCTTGGCTGGTGGAGCTTTTTCAGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCTGCTTTGGTGGCTGGAGACTGGACTGACCATTGGGTTTACTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAACTTCCTCATTCAAAGATCTCATGTCCCTCTACCTAGGGAGGAAGATGGCTATTAG 744 49.6 MAKIAIGSIHEASQPDCIRALIVEFIVTFLFVFAGVGSAMAANALLANALVGLFAVAVAHAFVVAVMISTGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLTYLTGGLVTPIHTLASGVGYLQGVIWEIILTFSLLFTVYGTIVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFLIQRSHVPLPREEDGY* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20340077 20342014 - CsaV3_2G030920.1 Csa02g02273 520330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02273 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Csa02g02273 247 SUPERFAMILY Aquaporin-like 11 241 IPR023271 -
Csa02g02273 247 PANTHER AQUAPORIN-8 2 245 IPR034294 -
Csa02g02273 247 PANTHER AQUAPORIN TIP4-1 2 245 - -
Csa02g02273 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa02g02273 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa02g02273 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa02g02273 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa02g02273 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa02g02273 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa02g02273 247 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Csa02g02273 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02273 Csa-Chr2:20340077 Csa07g02263 Csa-Chr7:21111287 2.66E-83 dispersed
Csa02g02273 Csa-Chr2:20340077 Csa06g02624 Csa-Chr6:23064934 2.48E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02273 K09873 - csv:101205380 447.588