Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02299 ATGAAGCGTAGCTCCTCCGAGTTGGCTCTCGAAGAGTTCCTCAGAAAGGCCGCCGTCATCTCTAACGACGACGCTACCGACCCCGAAGACGACGTCTTCAAAATAGACGACCAACAAATCATAATTAGAAGCCCTAAACGAGGCAAGAACTTTCAAGATTCCCCCGATGCCACCTACTTCTTCGGCGATATCGATTTCAGTTATTTCCTCGTCAAGAATAACCGGGAGATAATGGACGCAATTGTTAACTGTGGAGGTGGGCTGGCGGAGGCTCCTTTACGGTCACAGAATCTCACTCCTAAGCGTTCAAGCTTTTCACCCACTTTAGATTCCCAATCCTCTATCGTGGGCAGCCCAACATCAGCCAGTAATTTGATGGGCGGAGAACACCAAAGAGGAAACAATAGTGGGTCCTCTGAAGATCAATCTGATGATGAAATTGAAGCTGGTTCTTGTGACCAAAGTACTGACGCTCTTGCTTTGAAGAGAATGAGAAGAATGATCTCTAACAGGGACTCAGCTAGAAGATCAAGAAGAAGAAAACAAGCTCATTTGGCTGAACTCGAGAACCAGGTAAAACAGTTGAAAGGCGAAAATGAAACCTTGTTCAACCAACTTCTAGACGCTAGCCAACAATATCGTGATGCTAATACAAACAACCGTGTACTTAAATCAGACGTAGACGCATTAAGAGCTAAGGTCAAATTGGCTGAAGATACACTAGCTAGAGGCTCAATGACATGCAGCTTGAATCAGCTGTTACAGAGTCATTTGAGCACGCCGCAGCCACTAACGGCACTCCGACGAATGCCGACATCACCACTCGGTTTTTCTGGAGACGAAGTTTCTTATTCCGGTGTGACAATGTCGGGGCAGAACCCGACAGCGGCGGGGATCCCGAACTCAGAGATGCATATGAAAACTGGAATGGGTAGTGAGGCGGTTAGTTGTATTTCTGGGATTTGGCCTAGAAATTAG 978 46.73 MKRSSSELALEEFLRKAAVISNDDATDPEDDVFKIDDQQIIIRSPKRGKNFQDSPDATYFFGDIDFSYFLVKNNREIMDAIVNCGGGLAEAPLRSQNLTPKRSSFSPTLDSQSSIVGSPTSASNLMGGEHQRGNNSGSSEDQSDDEIEAGSCDQSTDALALKRMRRMISNRDSARRSRRRKQAHLAELENQVKQLKGENETLFNQLLDASQQYRDANTNNRVLKSDVDALRAKVKLAEDTLARGSMTCSLNQLLQSHLSTPQPLTALRRMPTSPLGFSGDEVSYSGVTMSGQNPTAAGIPNSEMHMKTGMGSEAVSCISGIWPRN* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20520268 20525369 - CsaV3_2G031180.1 Csa02g02299 520356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02299 325 PANTHER BASIC LEUCINE ZIPPER 9 1 323 - -
Csa02g02299 325 Coils Coil 171 240 - -
Csa02g02299 325 Gene3D - 161 217 - -
Csa02g02299 325 PANTHER BASIC LEUCINE ZIPPER 63 1 323 - -
Csa02g02299 325 SMART brlzneu 158 222 IPR004827 GO:0003700|GO:0006355
Csa02g02299 325 MobiDBLite consensus disorder prediction 98 140 - -
Csa02g02299 325 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 165 180 IPR004827 GO:0003700|GO:0006355
Csa02g02299 325 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 160 223 IPR004827 GO:0003700|GO:0006355
Csa02g02299 325 MobiDBLite consensus disorder prediction 98 155 - -
Csa02g02299 325 Pfam bZIP transcription factor 160 206 IPR004827 GO:0003700|GO:0006355
Csa02g02299 325 SUPERFAMILY Leucine zipper domain 162 211 IPR046347 GO:0003700|GO:0006355
Csa02g02299 325 CDD bZIP_plant_GBF1 180 214 IPR045314 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02299 K25784 BZIP9_10_25_63; bZIP transcription factor 9/10/25/63 - csv:101210908 625.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02299 Csa-Chr2:20520268 Csa07g01676 Csa-Chr7:17219788 1.43E-19 dispersed
Csa02g02299 Csa-Chr2:20520268 Csa02g00317 Csa-Chr2:2159724 2.06E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g231 . . . . . . . . . . . . . . Sed01g1291 . . Bhi04g01129 Tan02g2590 Cmetu03g1692 . . . . . . . . . . . . . Cone17ag1096 Cone20ag0619 . . . Cme03g01717 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01246 Cam08g1704 Cec08g1284 Cco08g1405 Clacu08g1401 . Cre08g1186 Lsi08g01109 Csa02g02299 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006028 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31025 PF00170 bZIP_1 3.70E-14 CL0018 Csa TF