Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02303 ATGGGTTCGATGGCGCCGTCGCCTGCGGTGGTTTCTGCTCCTGATTCCGATCAATCTAACAGTCTTCACAACGTTTTCGTCTATGGGACCCTCTTAGCAGACGACATCCTTCGTGTTCTTCTGAAGCGCATTCCTCAATCGTCTTCTGCTGTTCTCCATGGCCATCAGAGATTTAGCATTCGAGGACGTTTGTATCCAGCTATTTTGCCTGTTGTGAATGAGAGAGTTACCGGAAAGGTTCTCTTTGACATCACGAAACCAGAACTGGATATTTTGGATATATTTGAAGTTGTTGAATATGAAAGAAGGGCTGTTGAGATTTCCTTGGTGGATGGTTCCGAGAAATTACCAGCTCTTACTTATGTTTGGAGGAACAACGTAGATCCAAACTTGTATGGAGAGTGGAGTTTCGAGGAATGGAAAAAGTTGCGAAGGGAGGAGTTTGTAGAGCTGGCTACTAGATTTGTGGAAGAGTTGCAATTGGCTGAGCCAAAGTCTGACGTGGCAATTTATGACTCGTTTTACAATATAGAACGAGGTGATATCACTCTCATTGATTGA 561 44.03 MGSMAPSPAVVSAPDSDQSNSLHNVFVYGTLLADDILRVLLKRIPQSSSAVLHGHQRFSIRGRLYPAILPVVNERVTGKVLFDITKPELDILDIFEVVEYERRAVEISLVDGSEKLPALTYVWRNNVDPNLYGEWSFEEWKKLRREEFVELATRFVEELQLAEPKSDVAIYDSFYNIERGDITLID* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20556695 20559496 - CsaV3_2G031220.1 Csa02g02303 520360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02303 186 Gene3D - 11 129 - -
Csa02g02303 186 PANTHER AIG2-LIKE PROTEIN 18 161 - -
Csa02g02303 186 CDD GGCT_like 25 123 IPR013024 -
Csa02g02303 186 Gene3D - 130 178 - -
Csa02g02303 186 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 22 139 IPR036568 -
Csa02g02303 186 PANTHER AIG2-LIKE PROTEIN D 18 161 IPR045038 -
Csa02g02303 186 Pfam Gamma-glutamyl cyclotransferase, AIG2-like 25 136 IPR009288 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02303 - - - csv:101208941 370.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02303 Csa-Chr2:20556695 Csa03g04421 Csa-Chr3:38568525 8.20E-56 dispersed
Csa02g02302 Csa-Chr2:20552007 Csa02g02303 Csa-Chr2:20556695 1.08E-92 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g239 . . . . . . . . . . Cma01g01588 . . . . . . Bhi04g01117 . . . Hepe10g0331 . Lcy13g1370 . . . . . . . . . . Cone20ag0620 . . . Cme03g01714 . . . . . . . Bma02g00085 . Cmo01g01636 . Cma09g00542 . . . . Cpe02g00390 . . . . . . . Cla08g01250 Cam08g1708 Cec08g1288 Cco08g1409 Clacu08g1405 . Cre08g1189 Lsi08g01113 Csa02g02303 . Cme04g00316
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000996 1 12 1 1 1 2 2 2 2 4 2 2 3 4 3 3 2 2 3 2 3 2 2 2 2 2 2 5 4 1 79