Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02307 ATGGCCAAACCTCCCCTCTTCTTCTTCTTCCTCTTCTTCCTCCTCTTCAACCTCCCACCGTCCACCTCCGCCGTCCCTACCTCCACCGAAACCCTCCTCCGATTCAAATCCTCTCTCACCAACACCCTCGCATTATCCAACTGGAACTCCTCCGTTCCTCTTTGTTCCGGCGACCGCCGCTTCTGGACCGGCCTAATCTGCAAAAACGACCAACTGTACGGCATCCGCCTCGAGAACATGAGTCTTGGCGGGACCGTCGACACCGCCGCTCTAGCCGGCCTCCCGACGTTGAGGACTCTGAGTGTGATGAACAATAGATTTGAAGGCCCAATGCCCGATGTGAAGCGAATAGGAGCTCTTAGGGCTTTGTATCTTTCGAATAATAACTTCTCGGGTTCGATTTCGGGAGATGCGTTTGAAGGAATGGGGAATTTGAAGAGATTGTATTTGAGTGGGAATGGATTTTCCGGGGAGATTCCGGGGTCGTTGGTGGAGTTGAAAGCGGTGGTGGAGTTGGGATTGGAGGATAATATGTTTGAAGGAAGAATACCGGATTTGGGTGAAAGGGTTTGGAAATATTTGAATTTTTCGGGGAATCGTTTGGATGGGCCGATTCCTTATGGATTGAGTAAAGACAGTAATTTCACTTCCTACCTTGGTAACAATGGGTTGTGTGGAGAGCCACTAGGACCATGCAAATCATCCACAAAAAAATGGTACATTCTCATCGGAGTGCTCTCCGGCGCTGCCGCCTTAACCCTTTTTCTCCTTCTCCTCTACTGTTTTCTCCGCCCTTCCAAATCCTCCGCCGCCGTACACGACGACGCCAAAACCAGAACCAATTTATTTCTCTCTCCGAAAATTCTTTTCAAAAGGCCGGAAAGACCCCACCGATATTCCTCGACCGACTCGGACGAGAACTCGAATTTAAGTGGTCCGGGCGGGTCGGCTTTGTGTTTTGTGAGAACCGACCGGCTCCGGTTCGACTTTCAAGAACTTCTTGGGGCGTCGGCGGAAGTTCTTGGGAGTGGGAGCTTTGGGAAGTCTTATAAAGCGATGCTTTCAAATGGGTCGTCGGTGGTGGTGAAGAGATTCCGGGAAATGAACGCTGCCGGAAGAGGGGAGTTTTACAGCCACATGCGGCGGCTTGGACGGCTCTCGCATCCAAATTTACTTCCACTTGTTGCGTTTTATTATGGGAAAGATGACAAGCTTTTGGTGTCCGACTTTGTTCCCAATGGCAGCTTGGCTAGTCATCTCCATGGGCGAAAATCAGAGGGAAATGCAAGGCTAAATTGGGGAAAAAGGCTGAAGATCATAAAGGGGGTAGCAAGAGGTCTTTCCTATCTCCACAAGGAGCTCCCAAATTTAAGTCTTCCACACGGCAATTTAAAATCCTCCAACGTCCTTCTCGACCATAATTTCTCTCCAATTTTATCCGACTATGCTCTTTTCCCTCTCCTCCAAAAATCCCACGCCCACGCCCACATGGCCGCCTTCAAGTCGCCGGAGTTCTCCCCCGCCACCGCCGACCGTACCTCCAAATCCACCGACGTTTGGAGCCTCGGAATCCTTATCCTCGAAACTCTAACCGGAAAGTTCCCCACCAACTATCTCCGCCAGGGCAAGGGCGCCGACTCCGATCTCGCCGCTTGGGTTGATGCTGTTGTTAGGGAAGAGTGGACGGCGGAGGTTTTCGACGGCGATCTGGTCGTCGGGGGCGGAAATGAGGAGGAGGGTTGTTGTGATTGGGATTGTAATGAAGACATGTTGAAGCTTTTGAAGATTGGGATGTGTTGTTGTGAGTGGGAGGTTGGGAAAAGATGGGGATTGAAACAAGCTGTCGAGAAGATTGAGGAGTTGAATTTGAATGATGAGGGTGAAGAGTATTATTCTTCTTATGGGAGTGATTATAATGGGAGTTTTGTTTCTAATTCTTCTAATGTCAAGGGAAGAAAAACAAGGAAGATGATTACTAATGAGGATGAATCTTCCTTTTTGAGTTAG 2007 49.63 MAKPPLFFFFLFFLLFNLPPSTSAVPTSTETLLRFKSSLTNTLALSNWNSSVPLCSGDRRFWTGLICKNDQLYGIRLENMSLGGTVDTAALAGLPTLRTLSVMNNRFEGPMPDVKRIGALRALYLSNNNFSGSISGDAFEGMGNLKRLYLSGNGFSGEIPGSLVELKAVVELGLEDNMFEGRIPDLGERVWKYLNFSGNRLDGPIPYGLSKDSNFTSYLGNNGLCGEPLGPCKSSTKKWYILIGVLSGAAALTLFLLLLYCFLRPSKSSAAVHDDAKTRTNLFLSPKILFKRPERPHRYSSTDSDENSNLSGPGGSALCFVRTDRLRFDFQELLGASAEVLGSGSFGKSYKAMLSNGSSVVVKRFREMNAAGRGEFYSHMRRLGRLSHPNLLPLVAFYYGKDDKLLVSDFVPNGSLASHLHGRKSEGNARLNWGKRLKIIKGVARGLSYLHKELPNLSLPHGNLKSSNVLLDHNFSPILSDYALFPLLQKSHAHAHMAAFKSPEFSPATADRTSKSTDVWSLGILILETLTGKFPTNYLRQGKGADSDLAAWVDAVVREEWTAEVFDGDLVVGGGNEEEGCCDWDCNEDMLKLLKIGMCCCEWEVGKRWGLKQAVEKIEELNLNDEGEEYYSSYGSDYNGSFVSNSSNVKGRKTRKMITNEDESSFLS* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20577187 20580919 + CsaV3_2G031260.1 Csa02g02307 520364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02307 668 Pfam Protein kinase domain 339 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02307 668 PANTHER LRR RECEPTOR-LIKE KINASE 21 631 - -
Csa02g02307 668 Gene3D Phosphorylase Kinase; domain 1 309 410 - -
Csa02g02307 668 Pfam Leucine rich repeat 120 178 IPR001611 GO:0005515
Csa02g02307 668 Gene3D Transferase(Phosphotransferase) domain 1 411 633 - -
Csa02g02307 668 ProSiteProfiles Protein kinase domain profile. 335 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02307 668 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Csa02g02307 668 Gene3D Ribonuclease Inhibitor 27 135 IPR032675 -
Csa02g02307 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 631 - -
Csa02g02307 668 SUPERFAMILY L domain-like 27 228 - -
Csa02g02307 668 SUPERFAMILY Protein kinase-like (PK-like) 339 624 IPR011009 -
Csa02g02307 668 Gene3D Ribonuclease Inhibitor 136 242 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02307 - - - csv:101214710 1284.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02307 Csa-Chr2:20577187 Csa04g01851 Csa-Chr4:18200725 2.02E-119 dispersed
Csa02g02307 Csa-Chr2:20577187 Csa03g04418 Csa-Chr3:38547001 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g244 . . . . . . . . . . . . . . . . . Bhi04g01111 . . . . . Lcy13g1363 . . . . . . . . . . Cone20ag0623 . . . Cme03g01708 . . . . Bpe14g00541 . . . . . . . . . . . . . . . . . . . Cla08g01254 . . . . . . Lsi08g01116 Csa02g02307 . Cme04g00319
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012527 0 1 0 0 1 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 0 1 0 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77926 PF00069 Pkinase 1.90E-26 CL0016 Csa PK