Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02308 ATGCTTCGTGCTATTTTTTCGTATGGGAAAGTATTGGGCCCTGGATGGATGTCATGGGCCTCATTCAGCCCATTTCAAAACGCCTGTGCTTCGTGCTTCGAACAGTTCATTATTATCTCTCTCCCTGGCGCGCGCGGTTTTTTTCGGTTCTCGATTTCGTTTGTTTCCCGCCGTCGACATCCACATTTACGTTTTCCGGCGAGTTGTTCACTGCATTTCTTTTCTTTGTGGCCGACGGGTTGTTCCATGGCTTGGTGCGAAGGCGTTGAGGAAACTCGTATCCTCATTGCTCCTGATCATGGGGTCAAAGAAAATGTTACTGGATGCTTTCTTTCACTTCGCCATCCAAAATCAGGAAACCCAACATGTTTCCTATATGTAAATGAGATGTTAGAGGAAATTCACTGGTTTAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTGCTGAAGATGGCCGTCTGTATTCTGCCACTCCAGTAGATCCTGTATTCATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGAAGGGGGATGATCTTGGGAAATTCAGGCAGTTAGATGACATAATGTTCATCAATGGGTATCCTGGATATCTGCATTTACTGCCCCTTGCAGAGAAGTTTATGCAAGTAGTTTGTGAGGTCAAAGAAGTTGGATCATCTAGGTTTTTTAGGCTCGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTATGCCAACTAAAAAGAACTCTATGCACACTGGATAAAAACTATGCTGCAAGGGAAGAAAAAGAAACATTATGCGACGCCGTTTCAATTTTAGGGGAATACTTGAAGGATCAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATTTTGCTGAAGCAACCAGAAAAGCATCGGATTCAGAAAGGGCTCCTACTAGTATAGAGAACAATTTTGATTCTATCTCACAGGATAAGAGTGGGAGTAGAAGTGGGAGTGGCGCAAAGAATACAAGAAATGGAAAGCAAGCCAAGAAGCCTAAGGTGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAAGGCCGCAAAAAGAAAAAGATGA 1092 42.58 MLRAIFSYGKVLGPGWMSWASFSPFQNACASCFEQFIIISLPGARGFFRFSISFVSRRRHPHLRFPASCSLHFFSLWPTGCSMAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVAEDGRLYSATPVDPVFIFLPIFEEARMKKGDDLGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETLCDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20586294 20591378 + CsaV3_2G031270.1 Csa02g02308 520365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02308 363 PANTHER RIBONUCLEASE H2 SUBUNIT B 82 362 IPR040456 GO:0032299
Csa02g02308 363 Gene3D - 162 290 - -
Csa02g02308 363 MobiDBLite consensus disorder prediction 302 363 - -
Csa02g02308 363 MobiDBLite consensus disorder prediction 306 335 - -
Csa02g02308 363 Gene3D - 90 161 - -
Csa02g02308 363 MobiDBLite consensus disorder prediction 338 355 - -
Csa02g02308 363 CDD RNase_H2-B 94 264 IPR040456 GO:0032299
Csa02g02308 363 Pfam Ydr279p protein family (RNase H2 complex component) wHTH domain 166 249 IPR019024 -
Csa02g02308 363 Pfam Ydr279p protein triple barrel domain 110 163 IPR041195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02308 K10744 RNASEH2B; ribonuclease H2 subunit B - csv:101208210 579.326
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g271 . . . . . . . . Cmo05g00644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00559 Cpe11g00541 . . . . . . . . . . . . . . . . Csa02g02308 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014903 0 2 0 0 0 1 1 0 0 1 1 0 0 1 1 1 0 1 1 0 1 1 0 0 1 0 0 1 1 1 17