Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02323 ATGGGCGGTGATCATAAAGCCATCACTCTCGAGGAGATTAAAAACGAAGCCGTTGATCTGGAGCATATTCCAATAGAGGAAGTGTTTGAACAGTTGAAATGTACTCGAGAAGGTCTTACATCAGAGGAAGGAGCCCACCGGCTTCAAGTTTTTGGACCCAACAAACTAGAAGAGAAGAAGGAAAGCAAACTTCTCAAGTTTTTGGGTTTTATGTGGAATCCTTTATCTTGGGTAATGGAAGCTGCTGCCTTAATGGCTATTGTCCTAGCAAATGGCGGTGGAAGACCACCAGATTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACGATAAGTTTTATTGAAGAGAACAATGCTGGTAACGCGGCGGCCGCTCTCATGGCTGGTCTTGCTCCCAAAACCAAGGTTCTAAGGGATGGTCGTTGGAGTGAGCAAGAGGCTGCTATTCTTGTTCCGGGAGATATTATAAGCATTAAACTTGGAGACATAATACCAGCAGATGCCCGTCTTCTGGAGGGTGATCCTTTAAAAATCGACCAGTCTGCCTTAACTGGAGAATCGCTCCCAGTCACCAAGAACCCCTCAGATGAAGTATTTTCTGGATCTACATGTAAACAAGGTGAAATTGAAGCCGTTGTGATTGCCACTGGTGTGCACACATTTTTTGGCAAAGCAGCTCATTTGGTAGATAGCACCAATCAAGTTGGACATTTTCAGAAAGTTCTTACTGCTATTGGTAATTTCTGCATTTGCTCGATTGCTGTTGGAATACTAATCGAGCTTATAGTTATGTACCCGATACAACGACGCAAGTATAGAGATGGCATCGACAACTTGTTGGTGCTTTTGATTGGTGGAATCCCTATTGCCATGCCAACCGTGTTATCCGTTACCATGGCCATTGGTTCTCATAGGCTTTCTCAGCAGGGTGCCATTACCAAGAGAATGACAGCCATTGAGGAAATGGCTGGCATGGATGTTCTCTGCAGCGATAAGACAGGAACTCTGACCTTGAACAAACTAACTGTGGATAGAAGCTTGATCGAAGTGTTTGTCAAGGGTGTTGAGAAAGAGTATGTTATTCTTCTTGCGGCCAGGGCTTCTAGAACAGAGAACCAAGATGCTATTGATGCAGCTATCGTAGGAATGCTTGCGGATCCTAAAGAGGCACGAGCAGGAATTAGAGAGGTTCATTTCCTTCCATTCAATCCCGTTGACAAAAGAACTGCCCTTACTTACATCGACTCTAATGGAACTTGGCACCGAGTAAGCAAAGGTGCCCCTGAACAGATCCTAAATCTTTGCAACTCTAGAGAAGACGTTAGAAGGAAGGTTCATGCAGTGATTGACAAGTTTGCAGAGCGTGGACTTCGTTCGCTGGGTGTTGCAAGACAGGAAGTACATGAAAAAACAAAAGATAGCCCTGGAGGACCGTGGCAGCTTGTTGGTCTGTTGCCTCTATTTGATCCTCCTAGACACGATAGTGCAGAAACCATAAGAAGAGCTCTGAACCTTGGAGTAAATGTGAAGATGATTACTGGGGATCAACTTGCCATTGCCAAGGAAACTGGGCGTAGACTTGGTATGGGAACAAATATGTACCCTTCTTCATCATTACTTGGTCAAGACAAGGATGAATCTATTGCTTCACTTCCTGTGGATGAGTTGATTGAGAAGGCAGATGGGTTTGCTGGAGTATTCCCAGAACACAAATACGAAATTGTGAAAAGGCTGCAGGAAAGAAAACATATATGTGGAATGACCGGAGATGGTGTTAATGATGCTCCTGCTTTAAAGAAGGCAGATATCGGAATTGCTGTTGCGGATGCTACCGATGCTGCCAGAGGTGCTTCAGATATTGTCCTTACAGAACCAGGATTGAGTGTGATTATTAGTGCGGTGCTAACTAGTAGGGCTATTTTTCAGAGGATGAAGAACTACACGATTTATGCCGTTTCAATTACCATTCGTATAGTGTTTGGCTTCATGTTCATTGCCTTGATTTGGAAGTTTGATTTTGCTCCCTTCATGGTTTTAATAATAGCCATTCTGAATGATGGAACAATTATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCACAACCTGATAGTTGGAAACTGAAGGAGATTTTTGGAACTGGAATTGTGCTTGGAGGATACTTGGCACTAATGACGGTGTTATTCTTTTGGGCTGTGAAAGATACAAACTTCTTCTCAGAAAAATTCAATGTGAAATCCTTGAAAGATAGTCCTGAAGAATTGATGGCAGCATTGTATCTACAAGTAAGCATAATAAGCCAAGCACTAATCTTCGTGACAAGGTCACGCAGCTGGTCATACATGGAACGTCCAGGACTCCTCCTAGTGGGTGCATTTATAATAGCGCAGCTGGTGGCAACAGTGATAGCTGTATATGCGAATTGGGGTTTTGCAAGGATAAAAGGAATGGGATGGGGATGGGCTGGAGTTATATGGCTCTACAGCTTGGTAACATACATTCCTTTGGACATTTTGAAATTTGGAATCAGATATGCTCATAGTGGGAAGGCTTGGGACACACTTCTGGAGAACAAGACTGCATTCACAACGAAAAAGGATTATGGAAAAGAAGAGAGAGAAGCACAATGGGCAGCAGCACAGAGGACATTACATGGACTACAACCACCTGAGAACTCCAATCTCTTCCCTGAGAAAAGTAGTTATAGAGAGCTTTCTGAGATTGCTGAGCAAGCCAAACGTCGTGCTGAGGTTGCAAGGCTCCGAGAATTGCATACACTGAAGGGACATGTTGAATCGGTGGTGAAGCTGAAGGGGCTGGACATTGATACAATCCAACAACACTATACAGTTTAA 2868 43.55 MGGDHKAITLEEIKNEAVDLEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLIEVFVKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSNGTWHRVSKGAPEQILNLCNSREDVRRKVHAVIDKFAERGLRSLGVARQEVHEKTKDSPGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYLALMTVLFFWAVKDTNFFSEKFNVKSLKDSPEELMAALYLQVSIISQALIFVTRSRSWSYMERPGLLLVGAFIIAQLVATVIAVYANWGFARIKGMGWGWAGVIWLYSLVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV* 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20671660 20679826 - CsaV3_2G031420.1 Csa02g02323 520380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02323 955 SFLD C1.7: P-type atpase like 315 643 - -
Csa02g02323 955 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Csa02g02323 955 Gene3D - 904 955 - -
Csa02g02323 955 Coils Coil 906 926 - -
Csa02g02323 955 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Csa02g02323 955 CDD P-type_ATPase_H 38 845 IPR006534 GO:0008553|GO:0016021|GO:0120029
Csa02g02323 955 SUPERFAMILY Calcium ATPase, transduction domain A 136 233 IPR008250 -
Csa02g02323 955 Pfam Cation transporter/ATPase, N-terminus 22 85 IPR004014 -
Csa02g02323 955 PRINTS P-type cation-transporting ATPase superfamily signature 183 197 - -
Csa02g02323 955 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Csa02g02323 955 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Csa02g02323 955 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Csa02g02323 955 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Csa02g02323 955 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Csa02g02323 955 Gene3D - 330 629 IPR023214 -
Csa02g02323 955 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 38 810 IPR006534 GO:0008553|GO:0016021|GO:0120029
Csa02g02323 955 Gene3D - 136 220 - -
Csa02g02323 955 SFLD p-type atpase 315 643 IPR044492 -
Csa02g02323 955 PANTHER PLASMA MEMBRANE ATPASE 5 935 - -
Csa02g02323 955 Gene3D - 98 819 - -
Csa02g02323 955 SUPERFAMILY HAD-like 329 639 IPR036412 -
Csa02g02323 955 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Csa02g02323 955 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g02323 955 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g02323 955 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g02323 955 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g02323 955 PRINTS H+-transporting ATPase (proton pump) signature 764 785 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g02323 955 PANTHER CALCIUM-TRANSPORTING ATPASE 5 935 - -
Csa02g02323 955 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 105 352 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g02323 955 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 567 682 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g02323 955 Pfam E1-E2 ATPase 135 312 - -
Csa02g02323 955 Gene3D - 345 492 IPR023299 GO:0000166
Csa02g02323 955 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 851 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00210 Csa-Chr1:1358816 Csa02g02323 Csa-Chr2:20671660 0 dispersed
Csa01g00798 Csa-Chr1:5041399 Csa02g02323 Csa-Chr2:20671660 0 dispersed
Csa01g01854 Csa-Chr1:15592142 Csa02g02323 Csa-Chr2:20671660 0 dispersed
Csa01g02165 Csa-Chr1:18776502 Csa02g02323 Csa-Chr2:20671660 0 dispersed
Csa02g00645 Csa-Chr2:4876187 Csa02g02323 Csa-Chr2:20671660 0 dispersed
Csa02g02323 Csa-Chr2:20671660 Csa04g00175 Csa-Chr4:1008500 0 dispersed
Csa02g02323 Csa-Chr2:20671660 Csa03g04401 Csa-Chr3:38387284 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02323 K01535 - csv:101213505 1832.77