Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02327 ATGTATGACTGCTTTGTCGGAAGGGATGAAGAGGTCGTTCCATTTCGTGCTCAGCAGCTTAGAAAACTCTTGTGTGATCTGGGGCCTTCGTTCATTAAAGCTGGGCAGGTTCTTGCCAACAGACCTGATATTATTAGAGAAGATTATATGAATGAACTTTGCATTCTTCAAGACGATGTTCCGCCGTTTCCTAACGAGGTTGCTTTCAGTATCATAGAAGAAGAACTGGGTCGTCCTCTTGAAGCTGTTTTTAGCAAAATTTCGTCACAGACAATAGCAGCAGCAAGTTTGGGTCAAGTTTACCGAGCTACTCTACGAGACTCTGGCGAGGACGTTGCTATCAAGGTTCAAAGGCCTAAGATCGAGCCAATAATATACCAGGATCTTTTTCTCTTTCGTACACTGGCTTCTTTTTTAAACGGCATCAGTCTACAAAAACTTGGTTGTAATGCAGAGCTCATAGTTGATGAATTTGGTGAGAAGCTATTAGAGGAGCTTGATTATACTTTGGAAGCCCGTAACCTTGAGGATTTTATTGAAAACTTCAAAAATGATCCCACTGTAAAAATTCCTCGTGTCTACAAACAACTTTCTGGTTCACGAGTTTTGGTGATGGAATGGATTGATGGTATCCGCTGCACTGATCCACAGGCTATCAAGGATGCTGGCATTGATGTCGACGGATTTTTAACAGTTGGAGTTAGTGCAGCGTTGCGGCAATTGCTAGAATTTGGGTTATTTCATGGTGATCCCCATCCTGGAAACATTTTTGCAATGCGTGATGGACGTATAGCATATGTGGATTTTGGAAATGTTGCCGTGCTCAGTCAGCTAAATAAACAGATCCTGATTGATGCTGTTGTACATGCTGTAAATGAGGATTACGCTGAAATGGCAAATGACTTCACTAGGCTCGGGTTTCTGGCCCCTGGGACAGATGTTGCTCCTATCATTCCGGCATTAGAAGCAATTTGGCAAAATTCTGCTGGGAAAGGGTTATCCGATTTTAATTTCCGAAGTGTCACTGGCAAGTTCAATCAATTGGTCTATAATTATCCTATCCGAATACCTGAGAGGTTTTCTCTTGTTATCCGATCTCTCTTGACTCAAGAGGGAATTTGTTTTACTCTCAAGCCCAACTTCAAATTTCTTGAGGTTGCATATCCATACATTGCAAAGCGCCTTTTGACAGATCCAAACCCTACTTTACGTGAACGCCTCATTCAGGTTTTATTCAAAGATGGAATGTTTCAGTGGAAGCGTCTTGAGAATCTTATAGTGCTTGCTAAAGAGAACGTCGTTAAGATGAGCAGTAACCCAGCGTTGCAGAAGAAAGACCTGCAAGGTTCAAGACAAGTTGTGAATAAACTTGACCTCAAAGATACAATCAAGGATGGTGCTCGCCTATTTCTCATTGACGAAGGAATCCGCCGACAGCTGCTTCTTGCTTTGACTGAAGACTCACAGCTTCACGTGCAAGAGCTTGTCGATGTCTACAGATTACTTGAAGATCAGATAGACATACCATCAATGGCTTTGGAAGTAGCCCGAGATTTTCCATCAGTTGTTCGGGACCTAATGTTGGCTTGGACCGAATCCGTTCTATCGGACAGATAA 1617 42.55 MYDCFVGRDEEVVPFRAQQLRKLLCDLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFSIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRDSGEDVAIKVQRPKIEPIIYQDLFLFRTLASFLNGISLQKLGCNAELIVDEFGEKLLEELDYTLEARNLEDFIENFKNDPTVKIPRVYKQLSGSRVLVMEWIDGIRCTDPQAIKDAGIDVDGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQLNKQILIDAVVHAVNEDYAEMANDFTRLGFLAPGTDVAPIIPALEAIWQNSAGKGLSDFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGICFTLKPNFKFLEVAYPYIAKRLLTDPNPTLRERLIQVLFKDGMFQWKRLENLIVLAKENVVKMSSNPALQKKDLQGSRQVVNKLDLKDTIKDGARLFLIDEGIRRQLLLALTEDSQLHVQELVDVYRLLEDQIDIPSMALEVARDFPSVVRDLMLAWTESVLSDR* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20700134 20706177 - CsaV3_2G031460.1 Csa02g02327 520384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02327 538 PANTHER PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 1, CHLOROPLASTIC 1 538 - -
Csa02g02327 538 Gene3D Transferase(Phosphotransferase) domain 1 84 285 - -
Csa02g02327 538 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 1 538 - -
Csa02g02327 538 Pfam ABC1 atypical kinase-like domain 56 300 IPR004147 -
Csa02g02327 538 ProSiteProfiles Protein kinase domain profile. 86 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02327 538 SUPERFAMILY Protein kinase-like (PK-like) 57 275 IPR011009 -
Csa02g02327 538 CDD ABC1_ADCK3-like 56 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02327 - - - csv:101205089 1058.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02327 Csa-Chr2:20700134 Csa07g01088 Csa-Chr7:10438114 2.89E-108 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g230 . . . . . Bpe02g00276 . . . . Cma01g01591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00003 . . . . . . . Cmo01g01639 . Cma09g00545 . . . . Cpe02g00386 . . . . . . . . . . . . . . . Csa02g02327 . Cme04g00310
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007163 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 2 1 37