Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02331 ATGTCCGAAGAAGAGAAACAAGTGAAACCGTATTCCGAGGCGTCAACGACTTCCTCGGTTGAAATTCAGAATTGGATAGAAGCGCAAGATTTGCTGAAGAAGAAACTGATCAAAGAAGATGATTTGGAAGGGAACGGGGATGATTTGAAGTACGTCGGCGGCGTTGATATAAGCTTCTTAAAGGAAGATTCGTCAGTTGCGTGTGGTACGCTCGTGGTTATGGATCTTCAAACTCTTCAAGTTGTCTATGATGATTTCTCTCTTGCTACTGTTCAAGTTCCTTATGTCCCTGGCTTTCTCGCATTTAGAGAGGCCCCAGTTCTCTTGGAGCTTTTGGAAAGGATGAAAAAGAGAGCTCCTCTTTTGTATCCACAGTTATTGATGGTTGATGGCAACGGAATACTCCATCCTCGAGGTTTTGGTTTGGCCAGTCATCTCGGCGTTCTTGCTAATTTGCCTACAATTGGAATTGGCAAGAATCTGCATCATGTTGATGGTCTTACCCAGTCCAGCGTGAGGCAACTTCTTTCCGACGGCAAAAATAACGATTCTATAATAACTTTGAAGGGCATCTCTGGATGCATTTGGGGTGTGGCTATGAGATCTACTGTTGATTCATTGAAGCCTATATATGTTTCAATTGGTCATCGTGTTTCGCTTGATACTGCCATCAGGATTGTTAAAATCACTTGCACATTTCGTGTTCCAGAACCTATCCGACAGGCTGACATTAGATCAAGAGAATACCTCAGGAAATTTCAAATGGGAATGTTAAAAAGAACAACTTCATAG 792 42.42 MSEEEKQVKPYSEASTTSSVEIQNWIEAQDLLKKKLIKEDDLEGNGDDLKYVGGVDISFLKEDSSVACGTLVVMDLQTLQVVYDDFSLATVQVPYVPGFLAFREAPVLLELLERMKKRAPLLYPQLLMVDGNGILHPRGFGLASHLGVLANLPTIGIGKNLHHVDGLTQSSVRQLLSDGKNNDSIITLKGISGCIWGVAMRSTVDSLKPIYVSIGHRVSLDTAIRIVKITCTFRVPEPIRQADIRSREYLRKFQMGMLKRTTS* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20731294 20735980 + CsaV3_2G031500.1 Csa02g02331 520388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02331 263 CDD Endonuclease_V 22 248 IPR007581 GO:0004519|GO:0006281
Csa02g02331 263 Gene3D archaeoglobus fulgidus dsm 4304 superfamily 20 260 - -
Csa02g02331 263 Hamap Endonuclease V [nfi]. 21 253 IPR007581 GO:0004519|GO:0006281
Csa02g02331 263 Pfam Endonuclease V 32 243 IPR007581 GO:0004519|GO:0006281
Csa02g02331 263 PANTHER ENDONUCLEASE V 14 256 - -
Csa02g02331 263 PANTHER ENDONUCLEASE V 14 256 IPR007581 GO:0004519|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02331 K21813 ENDOV; endonuclease V [EC:3.1.26.-] - csv:101213021 514.612
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g168 . . . . Bpe02g01561 . . . Cmo05g00424 . . Cma05g00412 . . . . . Bhi04g01519 . . . Hepe08g1437 . Lcy13g2225 . . . . . . . . . Cone17ag0949 Cone20ag0292 . . . . Blo17g00272 Blo18g00260 Bda01g01348 Bda13g01585 Bpe14g00281 . Bma01g00910 Bma02g00549 . . . . . . Car05g00347 Cpe11g00352 . . . . . . . . Cla08g00984 Cam08g1433 Cec08g1011 Cco08g1134 Clacu08g1138 . Cre08g0922 Lsi08g00830 Csa02g02331 Chy03g00654 .
Vvi4g260 . . . . . . . . Cmo05g00669 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01302 . . . . . . . Car05g00586 Cpe11g00564 . . . . . . . . . . . . . . . . Csa02g02331 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010531 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32