Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02345 ATGATGAAAGAAATTAAGGGTGCTGTCAGAATCACGCGATCCCAGTATAAGTCTTCCAGTAGAATAGGAGATATTTCACCCTCATTACAACTTTCACTCACAGAATTGCGCAAACGTGGTCATACAGAAAACTCTGAACTAGCACAGCTAGATGGAAGTAATGCTTCTTCTAATATTACTGTTGGTGTTCGGCGCAAAAGAAGAGCAGTGCTCAAGGATGTTACTAACATGTCCTGTGAGAGTAATAATCTGGGGTACTTGCACGCTTCTAAAGTTCAGGTTCAAGAGGTTTCACAGACCGAATCACTTGAAGATTCATCCATTAAAGGGATGGCAGAATCACAACGTAGCTTTCCAGTGATGAAGTCAAACAAAAAAGAGACGAAGCAGGAGAATAAGTTTCAGAGTGTCATAGGATGCAGAAATTGTGCGTCTCCCCTGCCCTCAGGATCAAATGAACACCAAATGAAAGATGAGGCTGCTGTTTGTGAGAAATTAAACCATCTCGGTACTTTGGATGCTGTCTCAAACTCAGAGGATCCTCAAGCATGCACCCCATATGCGCATAATATATATGATACTAATCGTGTAATAGAGCTTGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCAGTCCAATCATGCGAGGCATTCTAATCGATTGGCTTGTGGAGGTTTCTGATGAATATAAATTGATCTCTGACACGCTTTACCTCACTGTAAATCTCATCGATCGGTTTCTCTCTCAAAGCTGCATTGAGAGGCATAAATTACAACTTCTTGGCGTTACTTGCATGTTAATTGCCTCTAAATATGAAGAAGTCTGTGCACCATTTGTGGAAGAGTTTTGCTTCATCACAGACAACACCTATGCGAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTGTCGGTACCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACGGGCTTCTTGCAAGGAATCTTGTGTGGAGCTGGAACATTTAACAAATTATCTAGCAGAGTTGACTCTTGGAGAGTACAGCTTCCTCAGGTTTCTGCCTTCAGCAGTAGCTGCATCAGTTGTGTTCTTAGCTAGATGGATTCTGCACCAACCAAATCAACCATGGAACTCGGCACTGGAGCATTATACCAATTACAATGCCTCTCAGCTAAAAATTCCTGTACTTGCCTTGGAAGATCTAAGGTTGAACTCCACAAGTTGCGGTTTAAACGCCGTATTTCAAAAATATAGACAACAAAAGTTCGGAAGTGTGGCAACTTTAGCCTCCACAAAATCAGTTCTCTCAGCCTTCCCAACCCAGACAGATAACCTGAATTCCAGGGACATTTGA 1386 41.56 MMKEIKGAVRITRSQYKSSSRIGDISPSLQLSLTELRKRGHTENSELAQLDGSNASSNITVGVRRKRRAVLKDVTNMSCESNNLGYLHASKVQVQEVSQTESLEDSSIKGMAESQRSFPVMKSNKKETKQENKFQSVIGCRNCASPLPSGSNEHQMKDEAAVCEKLNHLGTLDAVSNSEDPQACTPYAHNIYDTNRVIELDQRPSTNYMEKLQKYISPIMRGILIDWLVEVSDEYKLISDTLYLTVNLIDRFLSQSCIERHKLQLLGVTCMLIASKYEEVCAPFVEEFCFITDNTYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRRFVQVARASCKESCVELEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILHQPNQPWNSALEHYTNYNASQLKIPVLALEDLRLNSTSCGLNAVFQKYRQQKFGSVATLASTKSVLSAFPTQTDNLNSRDI* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20822634 20831368 - CsaV3_2G031640.1 Csa02g02345 520402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02345 461 PANTHER CYCLIN-A2-4 46 444 - -
Csa02g02345 461 PANTHER CYCLINS 46 444 IPR039361 -
Csa02g02345 461 MobiDBLite consensus disorder prediction 103 128 - -
Csa02g02345 461 ProSitePatterns Cyclins signature. 221 252 IPR006671 -
Csa02g02345 461 SUPERFAMILY Cyclin-like 179 316 IPR036915 -
Csa02g02345 461 Pfam Cyclin, C-terminal domain 319 440 IPR004367 -
Csa02g02345 461 CDD CYCLIN 317 397 IPR013763 -
Csa02g02345 461 CDD CYCLIN 220 309 IPR013763 -
Csa02g02345 461 MobiDBLite consensus disorder prediction 103 119 - -
Csa02g02345 461 SMART cyclin_7 226 310 IPR013763 -
Csa02g02345 461 SMART cyclin_7 323 411 IPR013763 -
Csa02g02345 461 Gene3D - 204 317 - -
Csa02g02345 461 SUPERFAMILY Cyclin-like 318 442 IPR036915 -
Csa02g02345 461 PIRSF Cyclin_A_B_D_E 18 454 IPR039361 -
Csa02g02345 461 SMART Cyclin_C_2 319 442 IPR004367 -
Csa02g02345 461 Gene3D - 191 438 - -
Csa02g02345 461 Pfam Cyclin, N-terminal domain 191 317 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02345 Csa-Chr2:20822634 Csa06g02128 Csa-Chr6:19014362 8.12E-94 dispersed
Csa07g01213 Csa-Chr7:11916314 Csa02g02345 Csa-Chr2:20822634 1.82E-50 dispersed
Csa05g01127 Csa-Chr5:11499822 Csa02g02345 Csa-Chr2:20822634 2.30E-16 transposed
Csa02g02345 Csa-Chr2:20822634 Csa03g04360 Csa-Chr3:38061781 9.34E-82 wgd
Csa02g02345 Csa-Chr2:20822634 Csa07g02205 Csa-Chr7:20738344 7.46E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02345 K06627 - csv:101211578 910.212