Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02355 ATGTCAACCGCCGTTGTCCTTACGCGTTCTAGCTCCTGGGCTCGCGCTCTCATCAACATCTCTCCCTACACTTTCTCCGCCATCGGTATCGCCATCGCCATCGGAGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTCATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAGATATATGCTCCCGAGTCTCTAAGAGCAGGATACGCAATTTTTGCTTCTGGAATCATAGTTGGCTTTGCAAACCTTGTTTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAGAACTCCTCCCTTTTTGTGAAAATTCTTGTAATCGAGATCTTCGGCAGTGCACTTGGGTTGTTCGGAGTAATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGAGAGGTTAA 549 47.72 MSTAVVLTRSSSWARALINISPYTFSAIGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKRG* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20918573 20920290 + CsaV3_2G031740.1 Csa02g02355 520412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02355 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Csa02g02355 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Csa02g02355 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Csa02g02355 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Csa02g02355 182 Gene3D - 23 177 IPR035921 -
Csa02g02355 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa02g02355 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa02g02355 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa02g02355 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Csa02g02355 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Csa02g02355 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Csa02g02355 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Csa02g02355 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01099 Csa-Chr3:8696334 Csa02g02355 Csa-Chr2:20918573 8.17E-22 transposed
Csa02g02355 Csa-Chr2:20918573 Csa03g04355 Csa-Chr3:38036988 5.81E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02355 K03661 - csv:101221052 328.946