Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02362 ATGAGCAATATTATTGTCCCTCTACCGGCCAACCTTGTGACAGACGTAGGTGATCCAGGATGGATGAGCAAAGGGGACAACGCATGGCAGATGACTGCGGCGACGTTAGTTGGACTACAAAGCGTACCAGGACTAATAATCCTATACGGGGGAGCGGTTAAGAAGAAATGGGCCATAAACTCAGCGTTTATGGCTCTATATGCGTTTGCCTGTGTGTTGGTGTGTTGGGTTGGGTGGGGTTATCGGTTGTCGTTTGGGGAAAAACTGGCGCCGTTTTGGGGGAAGTTGAATGTGGCATTGGATCAAGAGTATCTGTTGGCACCAGGTTTTGCTGGGAAGTTTCCAACCGCAACAATGGTGTTTTTTCAATTTGTGTTTGCGGCAATTACATTGGTTTTGATTGCTGGGGCTTTGCTTGGGCGTATGAATTTTTATGCTTGGATGTTGTTTGTGCCACTTTGGCTTACGTTTTCTTATACGTTTGTGGCTTTTAGTATTTGGAGTCCTGGTGGGTTTTTTGCTAAAATGGGACTCATTGATTACTCTGGTGGTTATGTTATTCATTTGTCCTCTGGTGTTGCTGGCTTCACTGCTGCTTATTGGGTTGGGCCACGGTTGTCGAAGGACAGAGAAAGCTTCCCTCCCAACAACATTCTTCTCATGCTAGCCGGAGCAGGGCTGTTGTGGATGGGTTGGACTGGTTTTAACGGGGGAGACCCCTACGCCGCCAACATCGACGCCTCACTGGCTGTTCTTAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATCATCTTCTTCAGAAAGCCCTCTGTCATTGGCGCTGTCCAGGGAATGATCACCGGCCTCGTTTGCATCACCCCCGCCGCAGGAGTTGTTCAAGGATGGGCAGCAATTATAATGGGAGTACTTTCAGGTTCAATCCCATGGTTCACAATGATGGTTGTTCACAAGAAATCCGCCATTCTTCAGAAGGTAGACGACACAATGGCCGTCCTCCACACCCACGCCATCGCCGGCAGCCTCGGTGGCATTTTAAGCGGCATCTTCGCCGAGCCACACCTCAACAACATCTTCTACGGAAACTACAACAAATACATCGGCCTTTTCTATGGCTTCAATACAAAACAAGTCAAACTCGGCTTCCGCCAACTTGGCGTCCAACTCCTCGGAATCATCTTCGTCACCCTCCTCAACATCATCGTTACTAGCCTTATCTGCGTCCTCCTCCAGTACATTGTCCCGCTCCGAATGTCGGAGGAGGACATGGCTATCGGAGACGAGGCCGCCCACGGTGAAGAGGCCTACGCCATTTGGGGCCAAGGTGAGAAGATGGATTCTTCTAAGTATGATATAGAGGCCCCAGTTTCCGCTAAACATAGGCATGCAGCTGGTCAGGTTGAAATGACTTGA 1431 49.9 MSNIIVPLPANLVTDVGDPGWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGEKLAPFWGKLNVALDQEYLLAPGFAGKFPTATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPGGFFAKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAIIMGVLSGSIPWFTMMVVHKKSAILQKVDDTMAVLHTHAIAGSLGGILSGIFAEPHLNNIFYGNYNKYIGLFYGFNTKQVKLGFRQLGVQLLGIIFVTLLNIIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEAPVSAKHRHAAGQVEMT* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20952657 20955060 + CsaV3_2G031810.1 Csa02g02362 520419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02362 476 SUPERFAMILY Ammonium transporter 21 424 - -
Csa02g02362 476 PANTHER AMMONIUM TRANSPORTER MEP2 6 476 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa02g02362 476 TIGRFAM amt: ammonium transporter 26 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Csa02g02362 476 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Csa02g02362 476 PANTHER AMMONIUM TRANSPORTER 6 476 - -
Csa02g02362 476 Gene3D Ammonium transporter AmtB like domains 13 446 IPR029020 -
Csa02g02362 476 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519|GO:0016020|GO:0072488
Csa02g02362 476 PRINTS Rhesus blood group protein signature 123 139 IPR002229 GO:0005887
Csa02g02362 476 PRINTS Rhesus blood group protein signature 219 237 IPR002229 GO:0005887
Csa02g02362 476 PRINTS Rhesus blood group protein signature 250 272 IPR002229 GO:0005887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02362 Csa-Chr2:20952657 Csa06g03370 Csa-Chr6:28054966 0 dispersed
Csa02g02362 Csa-Chr2:20952657 Csa02g01000 Csa-Chr2:9652408 1.49E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02362 K03320 - csv:101210590 956.436