Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02386 ATGGAGATTGTTGGATCTCGAATGTATGCAACAGTCGATCTTGATAAGGCCAGAGTTGGTCGAACGAGAATAGTGGATCAGCCATACAATCCTCATTGGAATGATCATTTTCGTATATATTGTGCTCATACAGTGTCACATATTATATTCACAGTTAAAGATGGAGATTTCATTGGTGCAACATTAATTGGAAGAGCTTATGTGCCTGTTGAGGAAATCATCAAGGGATTTGTATATGAGAAATGGGTTGACATATTAGATGAAGACGGTAAGCCTTTATATGGTCGTTCTAGAATCCATGTAAAGTTGCAATTTTCAAGTGTTAATGAAGACAGGAATTGGTCCCGAGGAATCTTGGATCCGAATTTTGAAGGTGTACCTTTCACATTCTTCAAACAAAGATGGGGTTGTAAAGTTTCTCTTTACCAGGATGCCCATGTTTTAAACAACTTCCTTCCTCGGGTTGGTTTGTCAGGAGGGAATTTTCATGAAGTACACAGGTGTTGGGAGGACATTTTTGATGCAATTAGCAACGCGAGACACTTGATTTACATAACTGGTTGGTCTGTGTATACAGAAATAACTTTGATCAGAGACCGAGAAAGAAGACAAACAGGAGATGATATTACTCTGGGACAACTGCTAAAGAAGAAGGCAGAAGAAGGTGTGACCGTTTTGCTTCTTGTTTGGGATGACAGGACTTCCATTGAAGTGTTCAAAAGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAATACTTCAGGAACTCGAAGGTACGTTGCGTTCTATGTCCACGGAGACCTGATGTAGGCAGAAGTACGATTCAGGGGTTTGAGACTGATACCATGTTTACTCACCACCAAAAAACAGTTGTGCTTGATAGTGAAATAGTTGGTGGAGGAACAGAAAAAAGAAGGATCATCAGTTTTGTTGGTGGCATTGATCTGTGTGATGGGAGATACGATACACCGCAGCACCCTTTGTTTTCAACTCTAGATTCAATCCACTATAACGATTTCCACCAGCCGAACTTTTCAGGCTCTTCAATTAGGAAAGGTGGTCCTCGAGAACCATGGCATGACATCCATTGCCGCCTAGAAGGGCCTGTTGCTTGGGATATTTTGTACAATTTTGAGCAAAGATGGAGAAAGCAAGTTGGAAACAACTCGTTGATTCCAATGCAAAAGCTCGAAGAAATCATTACCCGCCCAGTAATGGTTTTACCAGCAGACGACCCTGACACGTGGAGTGTTCAAATATTTCGGTCTATTGATGGTGGTGCTGTAGATGGTTTTCCAGATACACCCGAAGTTGCATCCAAAATGAACCTTGTAACTGGAAAGAATAATGTTATAGATAGGAGTATTCAAGATGCTTATATTAATGCTATTCGCCGAGCAAAAAAGTTTATATACATTGAGAATCAATATTTCCTTGGAAGTTCTTATGGTTGGAAAGCAGCTGGTATAAGGGTAGAAGAAATCAATGCTTTGCATACTATTCCCAAGGAGATATCACTGAAGATTGTAAGCAAGATTGAAGCCGGAGAGAGATTTACAGCATATGTTGTGATTCCAATGTGGCCAGAAGGTATTCCAGAGAGTGCTTCAGTTCAAGCTATATTAGATTGGCAAAGGAGAACATTAGACATGATGTACACAGATATAGCTCAAGCCCTTCGGAAGAAGGGTCTTGATGCAAATCCTAGAGATTACCTGACATTCTTCTGCCTTGGCAATCGAGAGAAGAAGAGAACTGGAGAATATATACCACCAGAGAAACCAGAGCCCAATTCGGATTATGCTCGGGCTCAAGAGCACCGACGTTTTATGATCTATGTTCACTCCAAAATGATGATAGTTGACGATGAGTACATAATTATTGGATCTGCCAACATCAACCAAAGATCAATGGATGGAGGAAGAGATTCTGAGATTGCAATGGGGGCTTTTCAACCTCGTCACTTGGCATCCAGTGAGCCAGCGAGAGGTCAAATCTACGGCTTCAGAGTGGCTCTATGGTACGAGCATCTTGGTCTGTTTGACAAAGTCTTCCATAACCCAGAGAGTGAAGACTGCATCCAATTCGTAAACAAGCTCGCTCAAGAGAACTGGCAATTTTACTCGGACGATACCTACGATGGCGATCTTCCTGGCCATTTGCTTTCCTATCCCATCCAAGTAGGCCCCAACGGATCGGTTTCGGCGCTGCCAAAGTTTGAATTTTTCCCTGACACGAAGGCTCGTGTTCTTGGCCAACTATCCGAGTATCTACCCCCAATCCTCACCACTTGA 2301 42.2 MEIVGSRMYATVDLDKARVGRTRIVDQPYNPHWNDHFRIYCAHTVSHIIFTVKDGDFIGATLIGRAYVPVEEIIKGFVYEKWVDILDEDGKPLYGRSRIHVKLQFSSVNEDRNWSRGILDPNFEGVPFTFFKQRWGCKVSLYQDAHVLNNFLPRVGLSGGNFHEVHRCWEDIFDAISNARHLIYITGWSVYTEITLIRDRERRQTGDDITLGQLLKKKAEEGVTVLLLVWDDRTSIEVFKRDGLMATHDQETAEYFRNSKVRCVLCPRRPDVGRSTIQGFETDTMFTHHQKTVVLDSEIVGGGTEKRRIISFVGGIDLCDGRYDTPQHPLFSTLDSIHYNDFHQPNFSGSSIRKGGPREPWHDIHCRLEGPVAWDILYNFEQRWRKQVGNNSLIPMQKLEEIITRPVMVLPADDPDTWSVQIFRSIDGGAVDGFPDTPEVASKMNLVTGKNNVIDRSIQDAYINAIRRAKKFIYIENQYFLGSSYGWKAAGIRVEEINALHTIPKEISLKIVSKIEAGERFTAYVVIPMWPEGIPESASVQAILDWQRRTLDMMYTDIAQALRKKGLDANPRDYLTFFCLGNREKKRTGEYIPPEKPEPNSDYARAQEHRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPRHLASSEPARGQIYGFRVALWYEHLGLFDKVFHNPESEDCIQFVNKLAQENWQFYSDDTYDGDLPGHLLSYPIQVGPNGSVSALPKFEFFPDTKARVLGQLSEYLPPILTT* 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21161532 21164280 + CsaV3_2G032050.1 Csa02g02386 520443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02386 766 PIRSF PLD_plant 1 766 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Csa02g02386 766 Pfam Phospholipase D C terminal 684 755 IPR024632 -
Csa02g02386 766 Gene3D Endonuclease Chain A 160 406 - -
Csa02g02386 766 Gene3D Endonuclease Chain A 432 657 - -
Csa02g02386 766 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 612 639 IPR001736 GO:0003824
Csa02g02386 766 SMART C2_3c 3 82 IPR000008 -
Csa02g02386 766 CDD C2_plant_PLD 2 105 - -
Csa02g02386 766 SUPERFAMILY Phospholipase D/nuclease 110 394 - -
Csa02g02386 766 Pfam Phospholipase D Active site motif 613 639 IPR001736 GO:0003824
Csa02g02386 766 Pfam Phospholipase D Active site motif 284 322 IPR001736 GO:0003824
Csa02g02386 766 SUPERFAMILY Phospholipase D/nuclease 451 695 - -
Csa02g02386 766 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 284 322 IPR001736 GO:0003824
Csa02g02386 766 SMART pld_4 612 639 IPR001736 GO:0003824
Csa02g02386 766 SMART pld_4 284 322 IPR001736 GO:0003824
Csa02g02386 766 ProSiteProfiles C2 domain profile. 1 83 IPR000008 -
Csa02g02386 766 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 108 IPR035892 -
Csa02g02386 766 PANTHER PHOSPHOLIPASE D 2 766 IPR015679 -
Csa02g02386 766 Gene3D C2 domain 3 118 IPR035892 -
Csa02g02386 766 Pfam C2 domain 6 84 IPR000008 -
Csa02g02386 766 PANTHER PHOSPHOLIPASE D ALPHA 3 2 766 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02386 Csa-Chr2:21161532 Csa06g00598 Csa-Chr6:5064048 0 dispersed
Csa02g00472 Csa-Chr2:3341776 Csa02g02386 Csa-Chr2:21161532 7.13E-19 transposed
Csa02g01727 Csa-Chr2:16957629 Csa02g02386 Csa-Chr2:21161532 0 transposed
Csa03g00348 Csa-Chr3:2867950 Csa02g02386 Csa-Chr2:21161532 0 transposed
Csa06g01777 Csa-Chr6:15623047 Csa02g02386 Csa-Chr2:21161532 1.44E-19 transposed
Csa06g03367 Csa-Chr6:28038914 Csa02g02386 Csa-Chr2:21161532 0 transposed
Csa02g02386 Csa-Chr2:21161532 Csa04g00153 Csa-Chr4:863917 0 wgd
Csa02g02386 Csa-Chr2:21161532 Csa07g02159 Csa-Chr7:20516256 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02386 K01115 - csv:101207900 1584.31