Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02386 ATGGAGATTGTTGGATCTCGAATGTATGCAACAGTCGATCTTGATAAGGCCAGAGTTGGTCGAACGAGAATAGTGGATCAGCCATACAATCCTCATTGGAATGATCATTTTCGTATATATTGTGCTCATACAGTGTCACATATTATATTCACAGTTAAAGATGGAGATTTCATTGGTGCAACATTAATTGGAAGAGCTTATGTGCCTGTTGAGGAAATCATCAAGGGATTTGTATATGAGAAATGGGTTGACATATTAGATGAAGACGGTAAGCCTTTATATGGTCGTTCTAGAATCCATGTAAAGTTGCAATTTTCAAGTGTTAATGAAGACAGGAATTGGTCCCGAGGAATCTTGGATCCGAATTTTGAAGGTGTACCTTTCACATTCTTCAAACAAAGATGGGGTTGTAAAGTTTCTCTTTACCAGGATGCCCATGTTTTAAACAACTTCCTTCCTCGGGTTGGTTTGTCAGGAGGGAATTTTCATGAAGTACACAGGTGTTGGGAGGACATTTTTGATGCAATTAGCAACGCGAGACACTTGATTTACATAACTGGTTGGTCTGTGTATACAGAAATAACTTTGATCAGAGACCGAGAAAGAAGACAAACAGGAGATGATATTACTCTGGGACAACTGCTAAAGAAGAAGGCAGAAGAAGGTGTGACCGTTTTGCTTCTTGTTTGGGATGACAGGACTTCCATTGAAGTGTTCAAAAGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAATACTTCAGGAACTCGAAGGTACGTTGCGTTCTATGTCCACGGAGACCTGATGTAGGCAGAAGTACGATTCAGGGGTTTGAGACTGATACCATGTTTACTCACCACCAAAAAACAGTTGTGCTTGATAGTGAAATAGTTGGTGGAGGAACAGAAAAAAGAAGGATCATCAGTTTTGTTGGTGGCATTGATCTGTGTGATGGGAGATACGATACACCGCAGCACCCTTTGTTTTCAACTCTAGATTCAATCCACTATAACGATTTCCACCAGCCGAACTTTTCAGGCTCTTCAATTAGGAAAGGTGGTCCTCGAGAACCATGGCATGACATCCATTGCCGCCTAGAAGGGCCTGTTGCTTGGGATATTTTGTACAATTTTGAGCAAAGATGGAGAAAGCAAGTTGGAAACAACTCGTTGATTCCAATGCAAAAGCTCGAAGAAATCATTACCCGCCCAGTAATGGTTTTACCAGCAGACGACCCTGACACGTGGAGTGTTCAAATATTTCGGTCTATTGATGGTGGTGCTGTAGATGGTTTTCCAGATACACCCGAAGTTGCATCCAAAATGAACCTTGTAACTGGAAAGAATAATGTTATAGATAGGAGTATTCAAGATGCTTATATTAATGCTATTCGCCGAGCAAAAAAGTTTATATACATTGAGAATCAATATTTCCTTGGAAGTTCTTATGGTTGGAAAGCAGCTGGTATAAGGGTAGAAGAAATCAATGCTTTGCATACTATTCCCAAGGAGATATCACTGAAGATTGTAAGCAAGATTGAAGCCGGAGAGAGATTTACAGCATATGTTGTGATTCCAATGTGGCCAGAAGGTATTCCAGAGAGTGCTTCAGTTCAAGCTATATTAGATTGGCAAAGGAGAACATTAGACATGATGTACACAGATATAGCTCAAGCCCTTCGGAAGAAGGGTCTTGATGCAAATCCTAGAGATTACCTGACATTCTTCTGCCTTGGCAATCGAGAGAAGAAGAGAACTGGAGAATATATACCACCAGAGAAACCAGAGCCCAATTCGGATTATGCTCGGGCTCAAGAGCACCGACGTTTTATGATCTATGTTCACTCCAAAATGATGATAGTTGACGATGAGTACATAATTATTGGATCTGCCAACATCAACCAAAGATCAATGGATGGAGGAAGAGATTCTGAGATTGCAATGGGGGCTTTTCAACCTCGTCACTTGGCATCCAGTGAGCCAGCGAGAGGTCAAATCTACGGCTTCAGAGTGGCTCTATGGTACGAGCATCTTGGTCTGTTTGACAAAGTCTTCCATAACCCAGAGAGTGAAGACTGCATCCAATTCGTAAACAAGCTCGCTCAAGAGAACTGGCAATTTTACTCGGACGATACCTACGATGGCGATCTTCCTGGCCATTTGCTTTCCTATCCCATCCAAGTAGGCCCCAACGGATCGGTTTCGGCGCTGCCAAAGTTTGAATTTTTCCCTGACACGAAGGCTCGTGTTCTTGGCCAACTATCCGAGTATCTACCCCCAATCCTCACCACTTGA 2301 42.2 MEIVGSRMYATVDLDKARVGRTRIVDQPYNPHWNDHFRIYCAHTVSHIIFTVKDGDFIGATLIGRAYVPVEEIIKGFVYEKWVDILDEDGKPLYGRSRIHVKLQFSSVNEDRNWSRGILDPNFEGVPFTFFKQRWGCKVSLYQDAHVLNNFLPRVGLSGGNFHEVHRCWEDIFDAISNARHLIYITGWSVYTEITLIRDRERRQTGDDITLGQLLKKKAEEGVTVLLLVWDDRTSIEVFKRDGLMATHDQETAEYFRNSKVRCVLCPRRPDVGRSTIQGFETDTMFTHHQKTVVLDSEIVGGGTEKRRIISFVGGIDLCDGRYDTPQHPLFSTLDSIHYNDFHQPNFSGSSIRKGGPREPWHDIHCRLEGPVAWDILYNFEQRWRKQVGNNSLIPMQKLEEIITRPVMVLPADDPDTWSVQIFRSIDGGAVDGFPDTPEVASKMNLVTGKNNVIDRSIQDAYINAIRRAKKFIYIENQYFLGSSYGWKAAGIRVEEINALHTIPKEISLKIVSKIEAGERFTAYVVIPMWPEGIPESASVQAILDWQRRTLDMMYTDIAQALRKKGLDANPRDYLTFFCLGNREKKRTGEYIPPEKPEPNSDYARAQEHRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPRHLASSEPARGQIYGFRVALWYEHLGLFDKVFHNPESEDCIQFVNKLAQENWQFYSDDTYDGDLPGHLLSYPIQVGPNGSVSALPKFEFFPDTKARVLGQLSEYLPPILTT* 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21161532 21164280 + CsaV3_2G032050.1 Csa02g02386 520443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02386 766 PIRSF PLD_plant 1 766 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Csa02g02386 766 Pfam Phospholipase D C terminal 684 755 IPR024632 -
Csa02g02386 766 Gene3D Endonuclease Chain A 160 406 - -
Csa02g02386 766 Gene3D Endonuclease Chain A 432 657 - -
Csa02g02386 766 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 612 639 IPR001736 GO:0003824
Csa02g02386 766 SMART C2_3c 3 82 IPR000008 -
Csa02g02386 766 CDD C2_plant_PLD 2 105 - -
Csa02g02386 766 SUPERFAMILY Phospholipase D/nuclease 110 394 - -
Csa02g02386 766 Pfam Phospholipase D Active site motif 613 639 IPR001736 GO:0003824
Csa02g02386 766 Pfam Phospholipase D Active site motif 284 322 IPR001736 GO:0003824
Csa02g02386 766 SUPERFAMILY Phospholipase D/nuclease 451 695 - -
Csa02g02386 766 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 284 322 IPR001736 GO:0003824
Csa02g02386 766 SMART pld_4 612 639 IPR001736 GO:0003824
Csa02g02386 766 SMART pld_4 284 322 IPR001736 GO:0003824
Csa02g02386 766 ProSiteProfiles C2 domain profile. 1 83 IPR000008 -
Csa02g02386 766 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 108 IPR035892 -
Csa02g02386 766 PANTHER PHOSPHOLIPASE D 2 766 IPR015679 -
Csa02g02386 766 Gene3D C2 domain 3 118 IPR035892 -
Csa02g02386 766 Pfam C2 domain 6 84 IPR000008 -
Csa02g02386 766 PANTHER PHOSPHOLIPASE D ALPHA 3 2 766 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02386 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - csv:101207900 1584.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02386 Csa-Chr2:21161532 Csa06g00598 Csa-Chr6:5064048 0 dispersed
Csa02g00472 Csa-Chr2:3341776 Csa02g02386 Csa-Chr2:21161532 7.13E-19 transposed
Csa02g01727 Csa-Chr2:16957629 Csa02g02386 Csa-Chr2:21161532 0 transposed
Csa03g00348 Csa-Chr3:2867950 Csa02g02386 Csa-Chr2:21161532 0 transposed
Csa06g01777 Csa-Chr6:15623047 Csa02g02386 Csa-Chr2:21161532 1.44E-19 transposed
Csa06g03367 Csa-Chr6:28038914 Csa02g02386 Csa-Chr2:21161532 0 transposed
Csa02g02386 Csa-Chr2:21161532 Csa04g00153 Csa-Chr4:863917 0 wgd
Csa02g02386 Csa-Chr2:21161532 Csa07g02159 Csa-Chr7:20516256 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g02159 . 1 809 Phospholipase D Gene Family (Wang group) AT1G52570 80.5 0.0e+00 1402.1
Csa04g00153 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 75.3 0.0e+00 1334.7
Csa02g02386 . 6 767 Phospholipase D Gene Family (Wang group) AT1G52570 66.6 0.0e+00 1118.2
Csa03g04088 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 60.0 5.2e-270 927.2
Csa07g02159 . 6 809 Phospholipase D Gene Family (Wang group) AT3G15730 81.1 0.0e+00 1407.5
Csa04g00153 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.1 0.0e+00 1340.5
Csa02g02386 . 6 767 Phospholipase D Gene Family (Wang group) AT3G15730 67.0 0.0e+00 1109.0
Csa02g02386 . 31 767 Phospholipase D Gene Family (Wang group) AT5G25370 67.2 2.7e-306 1047.7
Csa04g00153 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.4e-293 1004.2
Csa07g02159 . 73 809 Phospholipase D Gene Family (Wang group) AT5G25370 63.8 3.2e-291 997.7
Csa06g00598 . 127 1096 Phospholipase D Gene Family (Wang group) AT2G42010 70.4 0.0e+00 1429.1
Csa03g00348 . 14 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.8 0.0e+00 1241.9
Csa02g01727 . 4 847 Phospholipase D Gene Family (Wang group) AT2G42010 53.2 2.2e-272 935.6
Csa06g03367 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 2.7e-262 902.1
Csa06g00598 . 329 1096 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1251.9
Csa03g00348 . 82 852 Phospholipase D Gene Family (Wang group) AT4G00240 69.2 0.0e+00 1129.4
Csa02g01727 . 65 847 Phospholipase D Gene Family (Wang group) AT4G00240 55.9 4.4e-259 891.0
Csa06g03367 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.7 6.1e-253 870.5
Csa06g00598 . 267 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.5 2.0e-246 848.6
Csa03g00348 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.6 6.5e-245 843.6
Csa02g01727 . 13 635 Phospholipase D Gene Family (Wang group) AT4G11830 51.0 3.9e-181 631.7
Csa06g00598 . 251 1096 Phospholipase D Gene Family (Wang group) AT4G11840 64.4 0.0e+00 1142.1
Csa03g00348 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11840 64.7 0.0e+00 1129.4
Csa06g03367 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.0 2.6e-249 858.6
Csa02g01727 . 13 847 Phospholipase D Gene Family (Wang group) AT4G11840 50.5 4.6e-246 847.8
Csa06g00598 . 257 1096 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1203.3
Csa03g00348 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11850 67.8 0.0e+00 1192.6
Csa06g03367 . 4 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.0 1.6e-254 875.9
Csa02g01727 . 13 847 Phospholipase D Gene Family (Wang group) AT4G11850 50.8 3.4e-252 868.2
Csa06g03367 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 71.0 7.8e-300 1026.2
Csa02g01727 . 7 676 Phospholipase D Gene Family (Wang group) AT4G35790 66.5 4.4e-279 957.2
Csa02g00472 . 36 1111 Phospholipase D Gene Family (Wang group) AT3G05630 63.1 0.0e+00 1347.0
Csa06g01777 . 37 1027 Phospholipase D Gene Family (Wang group) AT3G05630 60.6 0.0e+00 1204.9
Csa06g01777 . 33 906 Phospholipase D Gene Family (Wang group) AT3G16785 72.6 0.0e+00 1276.5
Csa02g00472 . 34 989 Phospholipase D Gene Family (Wang group) AT3G16785 62.9 0.0e+00 1211.4
Csa07g02159 . 6 809 Phospholipase D Gene Family (Wang group) AT3G15730 81.1 0.0e+00 1407.5
Csa04g00153 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.1 0.0e+00 1340.5
Csa02g02386 . 6 767 Phospholipase D Gene Family (Wang group) AT3G15730 67.0 0.0e+00 1109.0
Csa07g02159 . 1 809 Phospholipase D Gene Family (Wang group) AT1G52570 80.5 0.0e+00 1402.1
Csa04g00153 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 75.3 0.0e+00 1334.7
Csa02g02386 . 6 767 Phospholipase D Gene Family (Wang group) AT1G52570 66.6 0.0e+00 1118.2
Csa06g00598 . 127 1096 Phospholipase D Gene Family (Wang group) AT2G42010 70.4 0.0e+00 1429.1
Csa03g00348 . 14 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.8 0.0e+00 1241.9
Csa02g01727 . 4 847 Phospholipase D Gene Family (Wang group) AT2G42010 53.2 2.2e-272 935.6
Csa06g03367 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 2.7e-262 902.1
Csa06g00598 . 329 1096 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1251.9
Csa03g00348 . 82 852 Phospholipase D Gene Family (Wang group) AT4G00240 69.2 0.0e+00 1129.4
Csa02g01727 . 65 847 Phospholipase D Gene Family (Wang group) AT4G00240 55.9 4.4e-259 891.0
Csa06g03367 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.7 6.1e-253 870.5
Csa06g00598 . 257 1096 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1203.3
Csa03g00348 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11850 67.8 0.0e+00 1192.6
Csa06g03367 . 4 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.0 1.6e-254 875.9
Csa02g01727 . 13 847 Phospholipase D Gene Family (Wang group) AT4G11850 50.8 3.4e-252 868.2
Csa06g00598 . 267 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.5 2.0e-246 848.6
Csa03g00348 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.6 6.5e-245 843.6
Csa02g01727 . 13 635 Phospholipase D Gene Family (Wang group) AT4G11830 51.0 3.9e-181 631.7
Csa06g00598 . 251 1096 Phospholipase D Gene Family (Wang group) AT4G11840 64.4 0.0e+00 1142.1
Csa03g00348 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11840 64.7 0.0e+00 1129.4
Csa06g03367 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.0 2.6e-249 858.6
Csa02g01727 . 13 847 Phospholipase D Gene Family (Wang group) AT4G11840 50.5 4.6e-246 847.8
Csa06g03367 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 71.0 7.8e-300 1026.2
Csa02g01727 . 7 676 Phospholipase D Gene Family (Wang group) AT4G35790 66.5 4.4e-279 957.2
Csa03g04088 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 60.0 5.2e-270 927.2
Csa02g02386 . 31 767 Phospholipase D Gene Family (Wang group) AT5G25370 67.2 2.7e-306 1047.7
Csa04g00153 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.4e-293 1004.2
Csa07g02159 . 73 809 Phospholipase D Gene Family (Wang group) AT5G25370 63.8 3.2e-291 997.7
Csa06g01777 . 33 906 Phospholipase D Gene Family (Wang group) AT3G16785 72.6 0.0e+00 1276.5
Csa02g00472 . 34 989 Phospholipase D Gene Family (Wang group) AT3G16785 62.9 0.0e+00 1211.4
Csa02g00472 . 36 1111 Phospholipase D Gene Family (Wang group) AT3G05630 63.1 0.0e+00 1347.0
Csa06g01777 . 37 1027 Phospholipase D Gene Family (Wang group) AT3G05630 60.6 0.0e+00 1204.9
Csa07g02159 . 6 809 Phospholipase D Gene Family (Wang group) AT3G15730 81.1 0.0e+00 1407.5
Csa04g00153 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.1 0.0e+00 1340.5
Csa02g02386 . 6 767 Phospholipase D Gene Family (Wang group) AT3G15730 67.0 0.0e+00 1109.0
Csa07g02159 . 1 809 Phospholipase D Gene Family (Wang group) AT1G52570 80.5 0.0e+00 1402.1
Csa04g00153 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 75.3 0.0e+00 1334.7
Csa02g02386 . 6 767 Phospholipase D Gene Family (Wang group) AT1G52570 66.6 0.0e+00 1118.2
Csa02g02386 . 31 767 Phospholipase D Gene Family (Wang group) AT5G25370 67.2 2.7e-306 1047.7
Csa04g00153 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.4e-293 1004.2
Csa07g02159 . 73 809 Phospholipase D Gene Family (Wang group) AT5G25370 63.8 3.2e-291 997.7
Csa03g04088 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 60.0 5.2e-270 927.2
Csa06g00598 . 127 1096 Phospholipase D Gene Family (Wang group) AT2G42010 70.4 0.0e+00 1429.1
Csa03g00348 . 14 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.8 0.0e+00 1241.9
Csa02g01727 . 4 847 Phospholipase D Gene Family (Wang group) AT2G42010 53.2 2.2e-272 935.6
Csa06g03367 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 2.7e-262 902.1
Csa06g00598 . 329 1096 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1251.9
Csa03g00348 . 82 852 Phospholipase D Gene Family (Wang group) AT4G00240 69.2 0.0e+00 1129.4
Csa02g01727 . 65 847 Phospholipase D Gene Family (Wang group) AT4G00240 55.9 4.4e-259 891.0
Csa06g03367 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.7 6.1e-253 870.5
Csa06g00598 . 257 1096 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1203.3
Csa03g00348 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11850 67.8 0.0e+00 1192.6
Csa06g03367 . 4 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.0 1.6e-254 875.9
Csa02g01727 . 13 847 Phospholipase D Gene Family (Wang group) AT4G11850 50.8 3.4e-252 868.2
Csa06g00598 . 267 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.5 2.0e-246 848.6
Csa03g00348 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.6 6.5e-245 843.6
Csa02g01727 . 13 635 Phospholipase D Gene Family (Wang group) AT4G11830 51.0 3.9e-181 631.7
Csa06g00598 . 251 1096 Phospholipase D Gene Family (Wang group) AT4G11840 64.4 0.0e+00 1142.1
Csa03g00348 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11840 64.7 0.0e+00 1129.4
Csa06g03367 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.0 2.6e-249 858.6
Csa02g01727 . 13 847 Phospholipase D Gene Family (Wang group) AT4G11840 50.5 4.6e-246 847.8
Csa06g03367 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 71.0 7.8e-300 1026.2
Csa02g01727 . 7 676 Phospholipase D Gene Family (Wang group) AT4G35790 66.5 4.4e-279 957.2
Csa06g01777 . 33 906 Phospholipase D Gene Family (Wang group) AT3G16785 72.6 0.0e+00 1276.5
Csa02g00472 . 34 989 Phospholipase D Gene Family (Wang group) AT3G16785 62.9 0.0e+00 1211.4
Csa02g00472 . 36 1111 Phospholipase D Gene Family (Wang group) AT3G05630 63.1 0.0e+00 1347.0
Csa06g01777 . 37 1027 Phospholipase D Gene Family (Wang group) AT3G05630 60.6 0.0e+00 1204.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000683 2 9 4 3 3 3 2 2 3 3 3 3 3 2 3 3 3 5 3 2 3 3 3 3 2 3 3 4 6 4 98