Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02412 ATGGCTTTTCGCAGCCACCTCTCTCGGGACCTTCCTCTCCATTACGCGAATCAGTCTCAACAGCAGCAATCGGAACGCCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAACTTACGGATCACTCTACAGCTGCCGATGGTTCTAAGTCTGAGAATCCGCTTCAGAGCGCTCCGAATTGGCTGAATACTGCTTTACTTCGGAATCAAACCCCTCATTCTCACTACTCCGGTGAGACCACGACGACCGCTGCGGATAACGTCAACACCGACTTCCTTAATCTTCACACGACTGCTCCCAATTCGTCCGGTCAATGGCTTTCCCGCCCGATCCTCCATCGCAATCAAAGTGATGTTATCGATGACGTCGCCGATGCTGCCGATGCTATGATTGGCGCTACTGCGACTTTGTCGCGTGAATCGGATGATTTGAAGAACAACAGCAGTGGTGGAGGAGGGGACGGTGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATTGTAATGAAGGTGCTCGTGGTGGAGAAGCGGCGATGAATTGGCAGAATGCGCAGTTTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTCTCTGCTCATGTCGCCTGCCTCCGGATCGCAACGCCGGTGGATCAGTTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGTAACGGTTCCCAGTCCATAGTCAGCAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTTTTTTACTTTGTTCTTTTAAAGAACAACTCCAGCAACATGTCCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTCTGCAAAGCTTGACAGGCGTTTCACCAGGTGTAGGTACGGGTGCTACAATGTCCGATGATGACGAAGACCAAATAGATAGCGATGCTATGTTTGATGGAAGTTTGGAGGGTCATGATACTATGGGATTCGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTCAGGCACGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATCTTACGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAATTAAAGCAGATAAATAACTGGTTTATTAACCAAAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACGACCTTGAAGACTAAACGCAAAAGGTGA 1353 47.97 MAFRSHLSRDLPLHYANQSQQQQSERPLSDNTLRSILSDQLTDHSTAADGSKSENPLQSAPNWLNTALLRNQTPHSHYSGETTTTAADNVNTDFLNLHTTAPNSSGQWLSRPILHRNQSDVIDDVADAADAMIGATATLSRESDDLKNNSSGGGGDGVNNSDDVAVESDCNEGARGGEAAMNWQNAQFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQSIVSNGKELDQFMTHYVFLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGVGTGATMSDDDEDQIDSDAMFDGSLEGHDTMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKR* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21279435 21284969 - CsaV3_2G032310.1 Csa02g02412 520469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02412 450 Pfam ELK domain 353 374 IPR005539 GO:0003677
Csa02g02412 450 Pfam KNOX2 domain 247 296 IPR005541 GO:0003677|GO:0005634
Csa02g02412 450 MobiDBLite consensus disorder prediction 431 450 - -
Csa02g02412 450 Pfam KNOX1 domain 188 228 IPR005540 GO:0003677|GO:0005634
Csa02g02412 450 MobiDBLite consensus disorder prediction 143 176 - -
Csa02g02412 450 SMART KNOX2_2 241 297 IPR005541 GO:0003677|GO:0005634
Csa02g02412 450 SUPERFAMILY Homeodomain-like 375 438 IPR009057 -
Csa02g02412 450 SMART ELK_2 353 374 IPR005539 GO:0003677
Csa02g02412 450 Pfam Homeobox KN domain 393 432 IPR008422 GO:0003677|GO:0006355
Csa02g02412 450 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 450 - -
Csa02g02412 450 MobiDBLite consensus disorder prediction 143 157 - -
Csa02g02412 450 ProSiteProfiles ELK domain profile. 353 373 IPR005539 GO:0003677
Csa02g02412 450 SMART KNOX1_2 186 230 IPR005540 GO:0003677|GO:0005634
Csa02g02412 450 MobiDBLite consensus disorder prediction 12 29 - -
Csa02g02412 450 ProSiteProfiles 'Homeobox' domain profile. 373 436 IPR001356 GO:0003677
Csa02g02412 450 Gene3D - 372 446 - -
Csa02g02412 450 SMART HOX_1 375 440 IPR001356 GO:0003677
Csa02g02412 450 CDD homeodomain 376 437 IPR001356 GO:0003677
Csa02g02412 450 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 48 450 - -
Csa02g02412 450 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02412 Csa-Chr2:21279435 Csa06g03487 Csa-Chr6:28557436 1.80E-30 dispersed
Csa05g00334 Csa-Chr5:2116274 Csa02g02412 Csa-Chr2:21279435 1.68E-131 transposed
Csa02g02412 Csa-Chr2:21279435 Csa04g02662 Csa-Chr4:25925517 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31030 PF03791 KNOX2 1.30E-18 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02412 - - csv:101213817 838.95