Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02414 ATGAACCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCCATCTCTTCGATTTCAAATTCCCTCTATTTTGGTGGGTGCTTCTTCTTTTGAACTACTTCAACAATCTCCTTCTCCCATTTCTCCATTTTTCGATTCAATGACTGCTTCTTCTCCCGGGATTCCGATAGGAATGGAGACTCTTTCAAACGATACCCACAAGAAAATGCTTATTGCACTTATCGTTTGTGCTTCATTCGGTGCTGTGTTAGTGGTTTCACTGTTTTTGTGGATTTATTACAGAAGAAACTCCCCCAACTTCCATAAACGAAACGGTCAGAGCTCAGATGCCGAGAAGGGAGTTGTTGGGTTAGCTCCGATATTGCGTAAATTCAGCTCAAACAAAATGATGGGTAGCAATAAAGTATCTGTTCCACTCATTGATTACGAGGTGCTGGAAAAAGCCACCAACATTTTCGAGGAAAGCAACATTTTAGGGGAGGGTGGATTTGGAAGGGTTTACAAGGCTCGTTTAGAAGAAAACTTATGTGTTGCTGTAAAGAAACTTGAATGTACCGATAAGGACTCAGAGAAAGAATTTGAGAATGAAGTTGATCTATTGAGCAAAATTCATCACTCGAACATTATTCGCCTTCTGGGTTACACCATTCATGGGGAATCAAGGCTTCTTGTTTACGAGTTAATGGAAAATGGATCACTAGAGACATTGTTACATGGTCCCTCACATGGAGAGGCATTAACATGGCACATGCGCATGAAGATTGCTCTTGATGCAGCTAGAGCATTAGAATATTTGCATGAGCACTGCAAGCCATCAGTAATACATAGAGATCTGAAATCCTCCAATATTCTTTTGGATGCAAACTTCAATGCCAAGCTTTCTGATTTTGGCTTGTCTGTCATTGTTGGAGCACAAAACAAGAATGATATAAAGCTTTCTGGAACGATGGGTTATGTTGCTCCTGAATATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTCTATGCTTTTGGAGTTGTGCTTTTGGAGCTTCTTTTAGGAAGAAGGCCTGTCGAAAAACTGGCACCATCTCAATGTCAATCTATTGTCACATGGGCTATGCCTCAACTCACTGATAGATCAAAGTTACCCGATATTGTTGATCCGGTGATCAGAAACACAATGGACCCGAAACATTTATTTCAGGTTGCTGCTGTCGCTGTACTGTGTGTGCAACCGGAACCGAGCTATCGTCCCCTAATAACAGATGTTTTGCACTCTCTTATTCCTCTTGTTCCTGTTGAGCTTGGAGGGACTCACAGATCATCAACATCACAAGCTCCTGTGGCTCCAGCTTAG 1338 41.11 MNLLLLLLLLLFPSLRFQIPSILVGASSFELLQQSPSPISPFFDSMTASSPGIPIGMETLSNDTHKKMLIALIVCASFGAVLVVSLFLWIYYRRNSPNFHKRNGQSSDAEKGVVGLAPILRKFSSNKMMGSNKVSVPLIDYEVLEKATNIFEESNILGEGGFGRVYKARLEENLCVAVKKLECTDKDSEKEFENEVDLLSKIHHSNIIRLLGYTIHGESRLLVYELMENGSLETLLHGPSHGEALTWHMRMKIALDAARALEYLHEHCKPSVIHRDLKSSNILLDANFNAKLSDFGLSVIVGAQNKNDIKLSGTMGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRRPVEKLAPSQCQSIVTWAMPQLTDRSKLPDIVDPVIRNTMDPKHLFQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGTHRSSTSQAPVAPA* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21306138 21310752 + CsaV3_2G032330.1 Csa02g02414 520471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02414 445 ProSitePatterns Protein kinases ATP-binding region signature. 157 180 IPR017441 GO:0005524
Csa02g02414 445 Gene3D Phosphorylase Kinase; domain 1 117 226 - -
Csa02g02414 445 Gene3D Transferase(Phosphotransferase) domain 1 227 427 - -
Csa02g02414 445 PANTHER BNAA04G14780D PROTEIN 31 441 - -
Csa02g02414 445 Pfam Protein kinase domain 151 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02414 445 SMART serkin_6 151 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02414 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Csa02g02414 445 SUPERFAMILY Protein kinase-like (PK-like) 127 421 IPR011009 -
Csa02g02414 445 CDD STKc_IRAK 157 424 - -
Csa02g02414 445 PANTHER OS01G0750732 PROTEIN 31 441 - -
Csa02g02414 445 ProSiteProfiles Protein kinase domain profile. 151 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02414 Csa-Chr2:21306138 Csa01g02799 Csa-Chr1:24642337 7.30E-93 dispersed
Csa02g02414 Csa-Chr2:21306138 Csa04g02655 Csa-Chr4:25873961 2.84E-173 wgd
Csa02g02414 Csa-Chr2:21306138 Csa07g02110 Csa-Chr7:20302074 1.12E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77929 PF00069 Pkinase 9.10E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02414 - - csv:101205958 863.218