Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02417 ATGCCTAGACCACAACAGAGATTCCGTGGTGTCCGACAGCGCCATTGGGGCTCTTGGGTCTCGGAAATCCGCCACCCCTTATTGAAGACTAGAATTTGGCTAGGCACTTTCGAAACAGCGGAAGATGCTGCACGAGCATACGACGAAGCTGCACGTCTTATGTGTGGACCGAGAGCGCGTACGAACTTCCCTTACGATGCTTCTCTGTCTCGCTCTTCATCTTCCCGCCTTCTCTCGGCTACTTTAACAGCTAAGCTCCATCGTTGCTACGTGGCCTCTATGCAGCTCACCAAGCAATCTTCCTCTGCCGCTCGTCGTCCTCAAACTGATGTAATCCGAACCGATTTTTCTGTAGCGTCCGGCATTGCTCCGGTGGAGCGAGTGGAAGTGGACACGATGACGGCAAAGAAAGTCAAAATGGAAAGCGTGGATTGTGAGGAGCCATTGATGATTGAAATGTTGGATGATGATCATATACAACAAATGATCGAGGAGCTACTTGATTACGGCGGAATTGAGCTTCGTTAA 528 50.38 MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYVASMQLTKQSSSAARRPQTDVIRTDFSVASGIAPVERVEVDTMTAKKVKMESVDCEEPLMIEMLDDDHIQQMIEELLDYGGIELR* 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21323734 21324807 + CsaV3_2G032360.1 Csa02g02417 520474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02417 175 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Csa02g02417 175 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Csa02g02417 175 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Csa02g02417 175 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Csa02g02417 175 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Csa02g02417 175 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 174 - -
Csa02g02417 175 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Csa02g02417 175 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Csa02g02417 175 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Csa02g02417 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02417 Csa-Chr2:21323734 Csa04g00174 Csa-Chr4:1000954 2.13E-47 dispersed
Csa02g02417 Csa-Chr2:21323734 Csa02g02418 Csa-Chr2:21330430 7.84E-60 tandem
Csa02g02417 Csa-Chr2:21323734 Csa04g02652 Csa-Chr4:25867321 5.09E-69 wgd
Csa02g02417 Csa-Chr2:21323734 Csa07g02109 Csa-Chr7:20295175 1.53E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31031 PF00847 AP2 1.90E-11 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02417 - - csv:101212705 325.094