Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02418 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCATGGGTCTCCGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAGAGCTTACGATGAAGCTGCTCGTTTAATGTGCGGTCCAAGAGCAAGAACCAATTTCCCTTTCAACTCAAATGACTCAAATTCCTCTTCTTCTAAACTTCTCTCGGCCAATTTGACTGCTAAACTCCACCGTTGCTGTATGGCGTCCCTTCATTTTCAGAAACCGGCCACCCATCGCTTCAATTCCGGCGTTGACGTGGCCGGGATTAAGCCGCTGACGGTGGAGGGAAATACCCAAACGGAGATCGGGCATCAGCCGTTCGTGGCCCTGGAAGAAGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTGCCACCCTCTCAGGCGTTTTGA 495 48.89 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21330430 21331506 + CsaV3_2G032370.1 Csa02g02418 520475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02418 164 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Csa02g02418 164 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Csa02g02418 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 101 - -
Csa02g02418 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 124 158 - -
Csa02g02418 164 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Csa02g02418 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 124 158 - -
Csa02g02418 164 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 101 - -
Csa02g02418 164 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Csa02g02418 164 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Csa02g02418 164 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Csa02g02418 164 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Csa02g02418 164 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02418 Csa-Chr2:21330430 Csa04g02652 Csa-Chr4:25867321 3.85E-68 dispersed
Csa02g02417 Csa-Chr2:21323734 Csa02g02418 Csa-Chr2:21330430 7.84E-60 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31032 PF00847 AP2 6.10E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02418 - - csv:101205730 308.145