Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02418 | ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCATGGGTCTCCGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAGAGCTTACGATGAAGCTGCTCGTTTAATGTGCGGTCCAAGAGCAAGAACCAATTTCCCTTTCAACTCAAATGACTCAAATTCCTCTTCTTCTAAACTTCTCTCGGCCAATTTGACTGCTAAACTCCACCGTTGCTGTATGGCGTCCCTTCATTTTCAGAAACCGGCCACCCATCGCTTCAATTCCGGCGTTGACGTGGCCGGGATTAAGCCGCTGACGGTGGAGGGAAATACCCAAACGGAGATCGGGCATCAGCCGTTCGTGGCCCTGGAAGAAGATCATATTGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTGCCACCCTCTCAGGCGTTTTGA | 495 | 48.89 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNSNDSNSSSSKLLSANLTAKLHRCCMASLHFQKPATHRFNSGVDVAGIKPLTVEGNTQTEIGHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPSQAF* | 165 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 21330430 | 21331506 | + | CsaV3_2G032370.1 | Csa02g02418 | 520475 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02418 | 164 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g02418 | 164 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700|GO:0006355 | |
Csa02g02418 | 164 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 101 | - | - | |
Csa02g02418 | 164 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 124 | 158 | - | - | |
Csa02g02418 | 164 | SUPERFAMILY | DNA-binding domain | 7 | 65 | IPR016177 | GO:0003677 | |
Csa02g02418 | 164 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 124 | 158 | - | - | |
Csa02g02418 | 164 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 | 1 | 101 | - | - | |
Csa02g02418 | 164 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g02418 | 164 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g02418 | 164 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g02418 | 164 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Csa02g02418 | 164 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02418 | Csa-Chr2:21330430 | Csa04g02652 | Csa-Chr4:25867321 | 3.85E-68 | dispersed | |
Csa02g02417 | Csa-Chr2:21323734 | Csa02g02418 | Csa-Chr2:21330430 | 7.84E-60 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31032 | PF00847 | AP2 | 6.10E-12 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02418 | - | - | csv:101205730 | 308.145 |