Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02432 ATGGCTAATTTTTCAATAGCTCTGTCTCTCTTCACCTTTCTCCTCCTCTTCATCAGCTTCTCAGAGGCTAGAGAGATTTTAGTCGGAGGCAAATCCAATGCCTGGAAAATCCCTTCTTCTCAATCTCAATCTCTCAATCAATGGGCTGAAACCTCTCGCTTTCGCATTGGCGACACTCTCGTGTGGGATTACGAAGATGGGAAAGATTCGGTACTGAAAGTGACGAAGGAAGATTATGAAGCCTGCAATACCGAAAACCCTGAACAGAGATTCGAAGATGGGAAGACGAAGGTGGAGCTAGAGAAGCCAGGACCATTTTATTTCATCAGTGGGGCAAAGGGTCACTGCGAGCAGGGCCAGAAGCTGATCGTTGTGGTCGTGACACCTCGCCGGAGGTTCATCGGGATCTCACCTGCGCCTTCTCCGGCGGAAAGTGAGGGTCCTGCGGTTGCTCCGTCGAGTGGAGCTGGTAATTTGAAGGTTGGGCTTTTGGCGGTGGTTGTAGGAATTTTGGGTGTTGGTGTTGGTTTGGTTTGA 537 49.72 MANFSIALSLFTFLLLFISFSEAREILVGGKSNAWKIPSSQSQSLNQWAETSRFRIGDTLVWDYEDGKDSVLKVTKEDYEACNTENPEQRFEDGKTKVELEKPGPFYFISGAKGHCEQGQKLIVVVVTPRRRFIGISPAPSPAESEGPAVAPSSGAGNLKVGLLAVVVGILGVGVGLV* 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21470225 21471273 + CsaV3_2G032510.1 Csa02g02432 520489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02432 178 CDD OsENODL1_like 24 126 IPR041846 -
Csa02g02432 178 Gene3D - 22 130 IPR008972 -
Csa02g02432 178 PANTHER BLUE COPPER PROTEIN 8 174 IPR039391 GO:0009055
Csa02g02432 178 SUPERFAMILY Cupredoxins 23 127 IPR008972 -
Csa02g02432 178 Pfam Plastocyanin-like domain 35 120 IPR003245 GO:0009055
Csa02g02432 178 PANTHER EARLY NODULIN-LIKE PROTEIN 3 8 174 - -
Csa02g02432 178 ProSiteProfiles Phytocyanin domain profile. 24 128 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02432 - - - csv:101210664 280.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02432 Csa-Chr2:21470225 Csa03g00531 Csa-Chr3:4428339 1.62E-38 dispersed
Csa02g02432 Csa-Chr2:21470225 Csa07g02147 Csa-Chr7:20473111 5.16E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02432 . 1 171 Phytocyanin Superfamily AT2G25060 53.5 8.1e-47 183.7
Csa03g03793 . 13 180 Phytocyanin Superfamily AT5G15350 54.4 5.7e-50 194.1
Csa02g02432 . 1 173 Phytocyanin Superfamily AT4G31840 51.1 4.3e-45 177.9
Csa02g02432 . 1 171 Phytocyanin Superfamily AT2G25060 53.5 8.1e-47 183.7
Csa02g02432 . 1 173 Phytocyanin Superfamily AT4G31840 51.1 4.3e-45 177.9
Csa03g03793 . 13 180 Phytocyanin Superfamily AT5G15350 54.4 5.7e-50 194.1
Csa06g02492 . 13 217 Phytocyanin Superfamily AT1G08500 57.1 5.0e-62 234.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31