Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02445 ATGGCTTCCAAGCTTTGTGACTCGTGTAAGTCCGCAACAGCCACTCTCTTCTGCCGTGCTGACTCTGCTTTCCTTTGTCTTGGCTGTGACTCCAAAGTTCACGCAGCCAACAAGCTTGCCTCTCGCCATGCTCGTGTTTGGGTTTGTGAAGTCTGTGAGCAAGCTCCGGCTCATGTAACCTGTAAGGCTGACGCTGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCGCTCGCACGTCGTCATGAACGTGTTCCAGTTACGCCTTTCTACGACACATCCAACTCTGACAACTCACTCCCTGTTAAACCTAGCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCCGATGTCGACGCTGATGCCGCCGATGTTAGTAGAGAAGAAGCCGAAGCTGCTTCCTGGCTTCTTCCCAACCCTAACCCGAAGGCAATAGAAAGTTCAGATCTGAACTCAGGCAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACAGCCATGTAGATCCGAAATTAGAAGCGCAAGAGCAGAATAGCTCCGGTGCCGATGGAGTTGTTCCTGTTCAAAGCAAAGGAGTTCATCTCTCATCAGCAAACGATCGTTGCCTTGGTATAGACTTCACCGGCACCAAATCGTTCCCGTACGGTCATAACCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATCGAGGTCGGAGTGGTGCCGGACGGGAACGCAATGACAGATGTATCAAATCCGTACACGAAACCTTCCACAGAATCGTCTGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAAGCGAGAGTGTTAAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAAGCTTACGCTGAGACGAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACTGACATCGAACTTGATGTTGATCGAGTGAGTGGATACGGCGTCGTTCCTTCGTTCTAA 1014 50.59 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLPVKPSAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYSHVDPKLEAQEQNSSGADGVVPVQSKGVHLSSANDRCLGIDFTGTKSFPYGHNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESSVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21557067 21559996 - CsaV3_2G032640.1 Csa02g02445 520502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02445 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Csa02g02445 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Csa02g02445 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Csa02g02445 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Csa02g02445 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Csa02g02445 337 CDD Bbox1_BBX-like 5 48 - -
Csa02g02445 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 337 IPR045281 GO:0009909
Csa02g02445 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 337 - -
Csa02g02445 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
Csa02g02445 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Csa02g02445 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Csa02g02445 337 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00615 Csa-Chr2:4503501 Csa02g02445 Csa-Chr2:21557067 6.05E-76 dispersed
Csa02g02445 Csa-Chr2:21557067 Csa04g00998 Csa-Chr4:7751656 8.96E-08 dispersed
Csa06g00354 Csa-Chr6:2826773 Csa02g02445 Csa-Chr2:21557067 1.79E-08 dispersed
Csa02g02445 Csa-Chr2:21557067 Csa01g02115 Csa-Chr1:18437986 1.65E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31036 PF00643 zf-B_box 3.70E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02445 - - csv:101208063 661.759