Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02445 ATGGCTTCCAAGCTTTGTGACTCGTGTAAGTCCGCAACAGCCACTCTCTTCTGCCGTGCTGACTCTGCTTTCCTTTGTCTTGGCTGTGACTCCAAAGTTCACGCAGCCAACAAGCTTGCCTCTCGCCATGCTCGTGTTTGGGTTTGTGAAGTCTGTGAGCAAGCTCCGGCTCATGTAACCTGTAAGGCTGACGCTGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCGCTCGCACGTCGTCATGAACGTGTTCCAGTTACGCCTTTCTACGACACATCCAACTCTGACAACTCACTCCCTGTTAAACCTAGCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCCGATGTCGACGCTGATGCCGCCGATGTTAGTAGAGAAGAAGCCGAAGCTGCTTCCTGGCTTCTTCCCAACCCTAACCCGAAGGCAATAGAAAGTTCAGATCTGAACTCAGGCAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACAGCCATGTAGATCCGAAATTAGAAGCGCAAGAGCAGAATAGCTCCGGTGCCGATGGAGTTGTTCCTGTTCAAAGCAAAGGAGTTCATCTCTCATCAGCAAACGATCGTTGCCTTGGTATAGACTTCACCGGCACCAAATCGTTCCCGTACGGTCATAACCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATCGAGGTCGGAGTGGTGCCGGACGGGAACGCAATGACAGATGTATCAAATCCGTACACGAAACCTTCCACAGAATCGTCTGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAAGCGAGAGTGTTAAGGTACAGAGAGAAGAGGAAGAATAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAAGCTTACGCTGAGACGAGACCGCGAATCAAAGGACGGTTCGCCAAACGGACTGACATCGAACTTGATGTTGATCGAGTGAGTGGATACGGCGTCGTTCCTTCGTTCTAA 1014 50.59 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLPVKPSAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYSHVDPKLEAQEQNSSGADGVVPVQSKGVHLSSANDRCLGIDFTGTKSFPYGHNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESSVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21557067 21559996 - CsaV3_2G032640.1 Csa02g02445 520502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02445 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Csa02g02445 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Csa02g02445 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Csa02g02445 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Csa02g02445 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Csa02g02445 337 CDD Bbox1_BBX-like 5 48 - -
Csa02g02445 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 337 IPR045281 GO:0009909
Csa02g02445 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 337 - -
Csa02g02445 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
Csa02g02445 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Csa02g02445 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Csa02g02445 337 CDD Bbox1_BBX-like 48 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02445 - - - csv:101208063 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00615 Csa-Chr2:4503501 Csa02g02445 Csa-Chr2:21557067 6.05E-76 dispersed
Csa02g02445 Csa-Chr2:21557067 Csa04g00998 Csa-Chr4:7751656 8.96E-08 dispersed
Csa06g00354 Csa-Chr6:2826773 Csa02g02445 Csa-Chr2:21557067 1.79E-08 dispersed
Csa02g02445 Csa-Chr2:21557067 Csa01g02115 Csa-Chr1:18437986 1.65E-105 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02445 . 6 338 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 1.4e-42 170.6
Csa02g02445 . 1 338 C2C2-CO-like Transcription Factor Family AT5G24930 61.0 8.2e-83 304.3
Csa01g02115 CCT 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.2e-57 220.7
Csa01g02115 CCT 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.2 4.3e-68 255.4
Csa02g02445 . 2 338 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.0e-53 206.1
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-90 328.9
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 3.5e-89 325.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa07g00027 CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 53.7 3.5e-48 189.1
Csa02g01300 CCT,ECH 1 173 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 6.2e-45 178.3
Csa04g00821 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.2 1.4e-78 290.0
Csa04g00581 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 60.5 2.6e-55 211.8
Csa06g03304 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Csa04g00581 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.0e-57 218.4
Csa06g03304 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Csa07g00027 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 54.8 3.8e-52 201.8
Csa02g02104 . 1 220 C2C2-CO-like Transcription Factor Family AT4G39070 50.7 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31036 PF00643 zf-B_box 3.70E-06 No_clan Csa TF