Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02451 ATGTGCAAAGTTGAGGAAGGGGCGGAGGTGACGGAGCGGCTGGAGGACAAAGAAGCAGCGGCAGCGGCAGCGGTGAAAGTGAAGGTGGGTGTGGTTTTGGATTTGAATGTTATTGTTGGGAAAATTAGTTTGAGTTGCATTTCAATGGCTCTTGCTGATTTCTATGCTCCTCGGAGTTATTATAAGACCAGAATCATCCTTAATCCCATTGATTCCAATGGCTCTGTTATTCGTGCAGCTGCTGCAGCTTTGGATTTGATAAAGAAAGTGGAAGTGCAAGCGATCATAGGGCCAACAAGTTCAATGCAAGCCAGCTTCATGATCGACATTGGAGACAAAGCAGAAGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACTTCTCACCGCAGTTCTTTCTTCTTCCGAGCCGCTCAAAACGATTCGTCTCAAGTCAAAGCCATTGGAGCCATCATCAAGACCTTCAAATGGCGACAAGTCGTCCCCATCTATAGCAACAATGAGTTCGGCGACGGTATCATCCCTGACCTAATCAACGCTCTACAAGAAGTAGACACCGACGTGCCATACCAAAGCAAAATTTCCCCCACTGCAACAGATGAGCAAATCGGCCACGAACTTTACAAGTTAATGACAATGCAAACGAGAGTATTCGTAGTACACATGCTAGCTCGTCATGCTTCTCGACTTTTCGCAAAAGCAAAAGAGATTGGAATGATGAAAGAAGGGTACGTTTGGATAATCACAGATGCTATAGGAAATACATTGGATTTAATAGAGCCTTCAGTATTGGAGTCCATGCAAGGAGTTTTAGGAATAAGAACTCACGTCCCCAAAACCAAAAGGCTTGAGGGTTTTAAACTTGAATGGCGTAAGAGATTTCGAAGATATTATCCAACAATAGAAGATATTCCTGATTTGAACGTGTTTGGGTTATGGGCTTACGATGCAGCTTGGGCATTAGCCAAAGCAGTGGAGAAGGCTGGAGCACATAACCTTAAATACAAACCAGCCACAAACATTTCAGCCATGGAAATGAACTCATCAAACTATTTATACAGTCTAGGAGTGAATGAAAATGGTGTAAAATTGAGAGATGCATTATCAAAGGTGAGTTTCAAAGGGTTAGCTGGTATGTTCAATTTGATAGATGGGGAATTGGAATCATCTGTTTTTGAGATAGTGAATTTGGTGGATAATGGAAGAAGAAATGTTGGGTTTTGGTCAGCAGAAAGTGGGTTAAGAAGGAAATTAAAAGATCATCAACAGGGTTCAAGATCAAGATCATCAACAAGTGGATTAAGGACCATAATTTGGCCAGGAGAAGCAGATTTTACTCCAAAAGGATGGGAAGTTCCAACGAATAGAAAAAAATTGAGAGTTGGAGTTCCAATAAAGAGTGGATTTCTTGAGTTCGTGAAAGTGGGGTTTGATCCTAAAACAAATGAAACGAAAGTGAGTGGTTATTGTGTAGATGTGTTTAAGGCTGTGGTTGAAGCTTTGCATTATGATGTTGCTTACGAATTTATTCCAATTAGCATTGAAAATTCAGATATAGGAGCCAGCTATAATGACTTGGCTTATCGACTCTTCCTTGGGGAGTTTGATGCTGTGGTAGCGGACTTAACGATCCGTGCAAATAGGTCGTTATACATAGACTACACATTACCATTTACAGAATCTGGTGTGTCAATGGTTGTGCCAATGAAGAGCACGAAGAATAAAAATGCATGGGAGTTCATAAGACCTCTAACAGGTCAAATGTGGGCTCTAACTGGTGGGTTCTTCCTTGTCATCGCACTTGTTGTTTGGATTCTTGAACATCGAATCAATGAAGAGTTTTATGAAGGAAGTGCTTTGGATCAGATCTGTACTAGTCTTTGGTACTCTTTCTCCACCATGGTTTTTGCCCATAGAGATGTTACATTTAACAACTGGACAAGAGTTGTGGTGATAATATGGCTGTTTGTAGTTCTAGTTATTACACAAAGTTACACCGCAAGTTTAGCTTCACTTTTGACGGTTCAAGAACTCAAACCAGCCGTAACTGATATCAATCAGCTTCTTAAAAATGGAGAGAACATCGGTTTTCAAGGGGGTTCTTTCGTTTATGAGATTCTTAAGTCCTTGAAGTTTAATGATTTCCAGCTCAAACCTTACGAAAGTGTAGAAGAAATGCACGAACTTTTCACAAAAGGAAGCATGAATGGAGGAATTTCTGCTGCCTTAGATGAAATCCCTTACATTAACCTATTTCTCGCAAAGTATTGCTCACACTATACTACCACCGAACCCACTTATAAAGCCGATGGGTTTGGTTTTGGTTTTCCAATAGGTTCGCCCTTAGTACCTGATATCTCGAGAGCAGTCTTGCAAGTGACAGAAAGTGATAGAATGAGAGAGATCGAAAACGCATGGTTTCAGAAGACGAAGGACTGTTCGGCATCGAAAGCTTCGGAGCTTTCTTCTAGTCGACTCAGCCCCATCAGCTTCTGGGGACTTTTTATGATCATCAGCGTTGTTTCATTTATTTCTTGCACCTCTTACATTGGCAAATTTCTGTACGACCAACGATACGAGTGGTTAAACGGAAATCAGACCATCTCTAGCTTGTTTCGAATGTTTATAATGGAGAGAGAATTGAGATAG 2655 41.24 MCKVEEGAEVTERLEDKEAAAAAAVKVKVGVVLDLNVIVGKISLSCISMALADFYAPRSYYKTRIILNPIDSNGSVIRAAAAALDLIKKVEVQAIIGPTSSMQASFMIDIGDKAEVPIISFSATRPSLTSHRSSFFFRAAQNDSSQVKAIGAIIKTFKWRQVVPIYSNNEFGDGIIPDLINALQEVDTDVPYQSKISPTATDEQIGHELYKLMTMQTRVFVVHMLARHASRLFAKAKEIGMMKEGYVWIITDAIGNTLDLIEPSVLESMQGVLGIRTHVPKTKRLEGFKLEWRKRFRRYYPTIEDIPDLNVFGLWAYDAAWALAKAVEKAGAHNLKYKPATNISAMEMNSSNYLYSLGVNENGVKLRDALSKVSFKGLAGMFNLIDGELESSVFEIVNLVDNGRRNVGFWSAESGLRRKLKDHQQGSRSRSSTSGLRTIIWPGEADFTPKGWEVPTNRKKLRVGVPIKSGFLEFVKVGFDPKTNETKVSGYCVDVFKAVVEALHYDVAYEFIPISIENSDIGASYNDLAYRLFLGEFDAVVADLTIRANRSLYIDYTLPFTESGVSMVVPMKSTKNKNAWEFIRPLTGQMWALTGGFFLVIALVVWILEHRINEEFYEGSALDQICTSLWYSFSTMVFAHRDVTFNNWTRVVVIIWLFVVLVITQSYTASLASLLTVQELKPAVTDINQLLKNGENIGFQGGSFVYEILKSLKFNDFQLKPYESVEEMHELFTKGSMNGGISAALDEIPYINLFLAKYCSHYTTTEPTYKADGFGFGFPIGSPLVPDISRAVLQVTESDRMREIENAWFQKTKDCSASKASELSSSRLSPISFWGLFMIISVVSFISCTSYIGKFLYDQRYEWLNGNQTISSLFRMFIMERELR* 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21607636 21614479 - CsaV3_2G032700.1 Csa02g02451 520508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02451 884 SUPERFAMILY Periplasmic binding protein-like I 26 452 IPR028082 -
Csa02g02451 884 CDD GluR_Plant 459 809 - -
Csa02g02451 884 Pfam Receptor family ligand binding region 46 401 IPR001828 -
Csa02g02451 884 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 869 - -
Csa02g02451 884 PANTHER GLUTAMATE RECEPTOR 2.9 27 869 - -
Csa02g02451 884 PIRSF IGluLR_plant 9 882 IPR017103 -
Csa02g02451 884 Gene3D - 460 579 - -
Csa02g02451 884 Gene3D - 144 311 - -
Csa02g02451 884 Pfam Bacterial extracellular solute-binding proteins, family 3 482 810 IPR001638 -
Csa02g02451 884 CDD PBP1_GABAb_receptor_plant 33 420 IPR044440 -
Csa02g02451 884 SUPERFAMILY Periplasmic binding protein-like II 436 810 - -
Csa02g02451 884 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Csa02g02451 884 SMART GluR_14 460 811 IPR001320 GO:0015276|GO:0016020
Csa02g02451 884 Gene3D - 756 817 - -
Csa02g02451 884 Gene3D - 580 712 - -
Csa02g02451 884 Gene3D - 340 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02110 Csa-Chr1:18392992 Csa02g02451 Csa-Chr2:21607636 0 dispersed
Csa02g02449 Csa-Chr2:21594924 Csa02g02451 Csa-Chr2:21607636 0 dispersed
Csa02g02451 Csa-Chr2:21607636 Csa06g01991 Csa-Chr6:17912287 0 dispersed
Csa04g02306 Csa-Chr4:23605583 Csa02g02451 Csa-Chr2:21607636 8.64E-143 dispersed
Csa02g02450 Csa-Chr2:21600847 Csa02g02451 Csa-Chr2:21607636 0 tandem
Csa02g02451 Csa-Chr2:21607636 Csa02g02452 Csa-Chr2:21618178 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02451 K05387 - csv:101203305 1673.68