Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02452 ATGATATGGCCGGGAGATACCGACGAGGCGCCAAAAGGGTGGGAGATTCCAATGGGTGAGAAGAAGTTAAGAGTTGGAGTTCCAGTGAAGGATGGATTTTTAGAGTTTGTGAATGTGGTTCGTGATCCAAAAACAAGTGCAACGGAAGTGAGTGGTTATTGTATAGATGTGTTCAAGGCTGTGATTGAAGCTTTGCCTTATGCTGTTGCTTATGAATTCATTCCTAACGACAAATCTAATGCACATCCCGGTGGTAGTTACAACGAATTAACTCATCAGCTCTACCTTGGGAAGTTTGATGCTGTGGTGGGTGACATAACGATACGAGCCAATAGGTCTGGGTACATAGACTATACATTGTCATTCACAGAATCTAGCGTATCCATGGTCGTGCCGACGAAGAGCAGCAAGAACACTAGCATGTGGGCTTTCTTAAAGCCTCTTACTTGGAAGTTATGGGTCGTTATAGGCTGCGCCTTTGTGTTCATGCCATTTATTGTTTGGATACTCGAACATCGAGTCAATGAGAAATTCAATGGAAGTGTTGTTGATCAGATTTTTAACAGTCTTTGCTACTCTTTTTCCACCATGGTTTTCGTCCATCGATCAGAGCCTACATACAATCATTGCACTAAAATTGTGGTAATAATATGGCTCTTTGTGGTTCTTATCATTACACAAAGTTACACTGCAAGTTTGGCTTCATTTTTTACTGTCCAAGAGCTCAAACCAACTGTAACTGATATCAATCAACTTCTTAAAAATGGAGAGAACGTTGGGTATCAAGGAGGTTCTTTCGTGTACGAGATTCTCAAGTCATTGAAGTTCCATGATTCCCAACTCAAAACTTATCAATCTCCGGAACAAATGCATGAACTTTTTCTCAAAGGAAGCACCAATGGCGGAATTTCTGTTGCTGTAGATGAAAACCCTTATATTAAGTTGTTTCTGGCCAAATATTGCTTCCAATATACCACCAGCGAACCCACTTACAAAGTCGATGGATTTGGTTTTGGTTTTCCGAGAGGCTCGCCGTTAGTATCTGACATTTCGAGAGCGATTTTGAAGGTAACAGAGGGTGATAGAATAAGAGAGATCGAAAACCAATGGTTCAAGAAGGTGAGAGAATGTTCGAGTTCAGAAGCTGCTGAATTGTCTTCCTCCCGCCTCAGTATCGACTTTTTGAGGGACTTTTTCTTGTAA 1203 41.31 MIWPGDTDEAPKGWEIPMGEKKLRVGVPVKDGFLEFVNVVRDPKTSATEVSGYCIDVFKAVIEALPYAVAYEFIPNDKSNAHPGGSYNELTHQLYLGKFDAVVGDITIRANRSGYIDYTLSFTESSVSMVVPTKSSKNTSMWAFLKPLTWKLWVVIGCAFVFMPFIVWILEHRVNEKFNGSVVDQIFNSLCYSFSTMVFVHRSEPTYNHCTKIVVIIWLFVVLIITQSYTASLASFFTVQELKPTVTDINQLLKNGENVGYQGGSFVYEILKSLKFHDSQLKTYQSPEQMHELFLKGSTNGGISVAVDENPYIKLFLAKYCFQYTTSEPTYKVDGFGFGFPRGSPLVSDISRAILKVTEGDRIREIENQWFKKVRECSSSEAAELSSSRLSIDFLRDFFL* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21618178 21620467 - CsaV3_2G032710.1 Csa02g02452 520509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02452 400 Pfam Ligand-gated ion channel 373 399 IPR001320 GO:0015276|GO:0016020
Csa02g02452 400 Gene3D - 322 379 - -
Csa02g02452 400 Gene3D - 141 284 - -
Csa02g02452 400 SUPERFAMILY Periplasmic binding protein-like II 4 372 - -
Csa02g02452 400 SMART GluR_14 22 373 IPR001320 GO:0015276|GO:0016020
Csa02g02452 400 PANTHER GLUTAMATE RECEPTOR 2.9 1 400 - -
Csa02g02452 400 Pfam Bacterial extracellular solute-binding proteins, family 3 47 372 IPR001638 -
Csa02g02452 400 CDD GluR_Plant 21 371 - -
Csa02g02452 400 Gene3D - 12 140 - -
Csa02g02452 400 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02452 Csa-Chr2:21618178 Csa06g01991 Csa-Chr6:17912287 7.62E-137 dispersed
Csa02g02451 Csa-Chr2:21607636 Csa02g02452 Csa-Chr2:21618178 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02452 K05387 - csv:101203550 701.434