Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02472 ATGGCAGCGCCGAAGCCTCGCACCACTCGGTCCAGGTCTCACAGGGACGTTCCTGATTTGGAGAAGATGGACGCTGCTTACAGTTGGGACGCCCTTGAATGGACCAAAATTGAGCCTGTTACGCGGTCGGTTTCGCGTGTCAACTTGGATTGCTTACTTGAGGCTGAACAAGTGATTGCTGAGGGCTATGGTGTTGTTCTTGTGAATACTGATGAGGCTGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACCATGGACGTTATTTCCCTTGGCACTATACCACTGGCGACAATTGATAAATTCAACAAAATTGTTGTGAAGTCAAATGCTGTCTCTCGCCAATCTGAAAAGTCTTCACCATCTAGGCGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTCCGTCCAAGAACAAAACAGAGGCGTAAAGTATATGATGCATTATTGAGGTGTATGAAACCGGCAAGAATATGGGATCTATATGCATTTCAGTGTGGGCCATCCAAGTACAGTAATACAGACCCAAAAGTTCGTTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTACATGCATCAATGAGCATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAAAATCAATTCCAGTTATACTCTGTGTCAGAGTTATCCATTTGCATTGGTTGTTCCTAAACACTTTAGTGATGAAGAGATGTTGCAGGCTTCTACCTTTCGTGCTAGATGTCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGGACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACCGATGAAAAGCTTGTTGCTGCACTTTGCTCGAATCTTGCTGGTGTTCGAGGGTCACAGCGTAGGAAGCTTTATATAGCGGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCCATGGGAGGTGGCTCGGAGTCTTCATCAAATTATTTTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTAAGAGAGTACTTGGATACACATGGTGAAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGAGGTAATCTTAGTAGCATGTCTGCATCTGTATCAACCCTGGGAGATAGTGGTTGGTTAATCCATGTTCAAAGCGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAAAGCAACGGTGCTAGTTCATTGCAGTGATGGCTGGGACAGAACAACACAACTAGTTTCACTTGCTAGCTTACTGCTTGATCCATATTATCGGACGTTTGCTGGATTTCAGGCGCTGGTTGAAAAGGATTGGCTAGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCATGCCGACTGTATCGGGAAGTGGTAACATGCCATATGAACTATCTAGGCAATCTTCAACTGGAAGTTTTTCTTCTTCACCCATGCGTCAGTCATCTGGAGCATTCATATCTCAAGCTTCCAGTTCTCCTCATGCACAAACATCCAACAACTGTTCTCCCATATTCTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCTTTTGAGTTCTCTTCAGCATTTCTTGTGGATCTGTTGGATTGTATGCTTTCTTGTCGCTTTGGGAACTTCTTATGCAATTGTGAGAAGGAGCGTCAGCAATGTGCAGTTTCTGAAGTTTGTGGCTGTCTATGGGCATATTTAGCCGATTTACGAGCCTCGGAAGGAGGTTCACATGTGCATTATAACCTTTTCTATGATCCAACGATTCCTACCAAACATGAAGGTGCTCTCTTACCTCCTGCAGCAGCTCTAGCTCCAACTCTCTGGCCACAATTTCATCTTCGTTGGGCTTGCCCAAAAGAATCTCAAGCTGGGGAACTTGAAGTCAGATGCAGGAAAATGGCTATACAATTATCTGAAATGCAGAAGGACAAAGAAATAGCCGAGAGAAAAGCCCAGGAGATGACGGCTGCCATGGAATCATTAAAATCAGAGTTGCAAAACGAGAAACAGTTAAGTACATCAGCTAGGAACGTTGCAAAAAATGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGTTGCAAGGTTCAAGTCTCTAGTAATGGCTATTGTACTGTTGACATTGATGGCGACCTGATGAAAAAATCCAACCAGAAAAGTCATCCTGCTTCAAGAAGGACTTCACATCGTTCACTGCCATCCCCTAGTGAAGAGAATGATCTCTCCCTTTCTATAACAGTTACAGCAGATGATGTGCCAAGTAACCCCCTCAGTCACATCTGTGAAGCTCTTTGCCCATTACGCACTCGGGATGGAGGATGCCAGTGGCCTGATGCTGGTTGTGCTCACATGGGTAGCCAATTTATTGGAATGAAGGCAAATTTCGAAGCATTCGATCAACTATCCATATATGATGGTTATTTCAAGCCAGAGTGA 2583 43.59 MAAPKPRTTRSRSHRDVPDLEKMDAAYSWDALEWTKIEPVTRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVISLGTIPLATIDKFNKIVVKSNAVSRQSEKSSPSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFQCGPSKYSNTDPKVRLLNEYFRLLGKGSLHASMSMIEDGSFTLSNELWRITKINSSYTLCQSYPFALVVPKHFSDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAALCSNLAGVRGSQRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEKATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGMPTVSGSGNMPYELSRQSSTGSFSSSPMRQSSGAFISQASSSPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGGSHVHYNLFYDPTIPTKHEGALLPPAAALAPTLWPQFHLRWACPKESQAGELEVRCRKMAIQLSEMQKDKEIAERKAQEMTAAMESLKSELQNEKQLSTSARNVAKNASKECEAIKRAIQSLGCKVQVSSNGYCTVDIDGDLMKKSNQKSHPASRRTSHRSLPSPSEENDLSLSITVTADDVPSNPLSHICEALCPLRTRDGGCQWPDAGCAHMGSQFIGMKANFEAFDQLSIYDGYFKPE* 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21736837 21759928 - CsaV3_2G032910.1 Csa02g02472 520529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02472 860 MobiDBLite consensus disorder prediction 764 790 - -
Csa02g02472 860 ProSitePatterns Tyrosine specific protein phosphatases active site. 442 452 IPR016130 GO:0016311|GO:0016791
Csa02g02472 860 Coils Coil 675 716 - -
Csa02g02472 860 ProSiteProfiles Myotubularin phosphatase domain. 199 657 IPR010569 -
Csa02g02472 860 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 216 661 IPR029021 -
Csa02g02472 860 Gene3D - 63 163 IPR011993 -
Csa02g02472 860 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 859 - -
Csa02g02472 860 MobiDBLite consensus disorder prediction 776 790 - -
Csa02g02472 860 PANTHER MYOTUBULARIN-RELATED 19 859 IPR030564 -
Csa02g02472 860 Pfam Myotubularin-like phosphatase domain 172 596 IPR010569 -
Csa02g02472 860 CDD PTP-MTM-like 262 556 - -
Csa02g02472 860 SUPERFAMILY PH domain-like 51 176 - -
Csa02g02472 860 SMART gram2001c 43 111 IPR004182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02472 K18081 MTMR1_2; myotubularin-related protein 1/2 [EC:3.1.3.64 3.1.3.95] - csv:101204839 1716.05
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa07g01336 . 65 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.0 1.6e-117 419.5
Csa01g00011 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1085.1
Csa06g01564 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.7 1.4e-40 162.9
Csa06g02399 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 5.1e-70 260.8
Csa05g02758 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.2e-113 406.4
Csa05g00878 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 3.2e-111 398.3
Csa03g03940 . 151 599 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Csa06g01343 . 15 215 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 8.4e-74 273.9
Csa06g02393 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 6.2e-69 257.7
Csa01g03339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.5e-54 209.9
Csa03g00252 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 7.3e-102 367.5
Csa02g00073 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 4.6e-80 295.0
Csa03g00252 . 38 213 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Csa06g01343 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 5.7e-78 287.3
Csa06g02393 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Csa01g03339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.9e-57 219.2
Csa01g03339 . 3 201 Protein tyrosine phosphatase (PTP) family AT3G02800 69.7 2.8e-80 295.0
Csa06g01343 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 3.1e-55 211.8
Csa06g02393 . 37 228 Protein tyrosine phosphatase (PTP) family AT3G02800 50.5 8.7e-50 193.7
Csa05g00673 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.6 1.0e-61 235.3
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa07g00734 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Csa06g02964 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 62.6 9.9e-198 686.8
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa06g01286 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.6 8.9e-71 263.8
Csa03g00186 . 19 303 Protein tyrosine phosphatase (PTP) family AT2G35320 64.9 1.5e-109 392.9
Csa04g01589 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 3.4e-276 947.6
Csa04g01589 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.3e-251 865.9
Csa04g01589 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.3 1.8e-183 639.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35