Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02502 ATGGCGAAGCCTCTTGGGGCTTCTAATAAGTTTAGGAAAAGACCTGCAAAGCTGGTGCTGCCGGAATATTGTCCTGGACCCGAATTTTCAAAACTCAGGAAGAAAATGGAGATTCAGGAATTCCATGTCCAAGGCAGAGATTACTGTTTGGCGACCAAGAAAGGAAGGCGAGAAACGTTGGAGGATGCTTATGGAGTTATGCTTGATATTTGCGGAGATTCCAAACAGGCTTTCTTCGCTGTAGTGGACGGACATGGCGGTCGGGATGCCGCCGATTACGTGGTGGAACATTTAGGGAAGAACATCATAAACGCTCTTGAGAAAATTGCTGGTGAGGAAGAAAAGGCAATCGAATCCGCAATTCGCAGGGGTCACAAACGCACAGACGAGGAGTTCCTTAGTCAGGGCGTCGGTAGTGGAGCCTGTGCGGCGAGCGTGCTGGTGAAAAACGGCGAGCTTCATGTGGCAAACGTCGGAGATTGTCGAGTAGTATTGAGCAGAAACGGGGTGGCGACGCCATTAACGAAGCAGCACCGACTGTGTCGAGAAGAAGAGCGGGTCCGGATAGAGAAGTCGGGAGGGTTTGTGGAGTGCAAAAATGGAGTGTGGAGAGTTCAAGGATCGTTGGCGGTGTCGAGGGCCATTGGAGATTTGCATTTGAAAGAATGGGTGATTTCAGAGCCTGAAATTCATCGTCTTCCTCTAACTCCTGATTGCGAGTTCTTGATAATGGCGTCTGATGGACTGTGGGATAAGGTAAAAGATCAAGAGGCAGTGGATGAAGTAATGAGGGAAATGGGAGATGAGAAGAATAATGATGAAGGCATGAAGGCATGCAAAATGCTAATGGAAATGTCATTTAGAAGAGGAAACATGGATGATGTCACAGTCATGCTCATCCAACTTCAACCCTTCTTCATTTCCATTTAG 930 47.85 MAKPLGASNKFRKRPAKLVLPEYCPGPEFSKLRKKMEIQEFHVQGRDYCLATKKGRRETLEDAYGVMLDICGDSKQAFFAVVDGHGGRDAADYVVEHLGKNIINALEKIAGEEEKAIESAIRRGHKRTDEEFLSQGVGSGACAASVLVKNGELHVANVGDCRVVLSRNGVATPLTKQHRLCREEERVRIEKSGGFVECKNGVWRVQGSLAVSRAIGDLHLKEWVISEPEIHRLPLTPDCEFLIMASDGLWDKVKDQEAVDEVMREMGDEKNNDEGMKACKMLMEMSFRRGNMDDVTVMLIQLQPFFISI* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22052604 22054805 + CsaV3_2G033210.1 Csa02g02502 520559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02502 309 PANTHER PROTEIN PHOSPHATASE 2C 8 306 IPR015655 GO:0004722|GO:0006470
Csa02g02502 309 Pfam Protein phosphatase 2C 52 294 IPR001932 -
Csa02g02502 309 CDD PP2Cc 46 302 IPR001932 -
Csa02g02502 309 SUPERFAMILY PP2C-like 46 303 IPR036457 -
Csa02g02502 309 ProSiteProfiles PPM-type phosphatase domain profile. 47 302 IPR001932 -
Csa02g02502 309 SMART PP2C_4 39 300 IPR001932 -
Csa02g02502 309 Gene3D - 43 304 IPR036457 -
Csa02g02502 309 PANTHER PROTEIN PHOSPHATASE 2C 2-RELATED 8 306 - -
Csa02g02502 309 SMART PP2C_SIG_2 62 302 IPR001932 -
Csa02g02502 309 Coils Coil 103 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00408 Csa-Chr1:2556187 Csa02g02502 Csa-Chr2:22052604 1.10E-35 dispersed
Csa02g02502 Csa-Chr2:22052604 Csa05g00829 Csa-Chr5:6160066 2.03E-86 dispersed
Csa05g02632 Csa-Chr5:27433334 Csa02g02502 Csa-Chr2:22052604 2.87E-27 dispersed
Csa02g02502 Csa-Chr2:22052604 Csa03g02203 Csa-Chr3:19119262 5.24E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02502 K17506 - pop:18104353 401.749