Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02536 ATGATTGGTCAGCAGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGAATGGGCATCTATGAGCCATTTCATCAGATCAACTCATGGCCAAATGCATTTGGTAGCCGACTAGATACGAGCATATCACCTATTACTAAAGTGGACGACTGTGTTGACAATAAACCCGAGTTTGTTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGACGATAAGGTACAAAGACGTTTAGCACAAAACCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGGAGGAGCTAGAAAGAACTAGGCAACAGAAGGGTAACGGCTGCTTAGTCGACACCAGTCACATCGGATTCAGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCAACGAACTTAGAAAGGCGCTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTATTTTGCATGAAAGCCAAAGTTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTGTTTGGAGATCATCGGCAGAGCGATTTTTCCTCTGGATAGGCGGATTTCGCCCTTCGGAACTGCTAAATGTTCTCAAACCATACCTCGAGCCTTTAAATGAACAACAAAGAGCAGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCCGAAGATGCACTCACTCAAGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCGGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAATTTGAAGCATTGGAGAGCTTCATAAGCCAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACCTCCTAACCACGAGACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGTGTTCTTAGTTCGCTCTGGGCCACTCGACCTCGTGAACCTGCGTAG 1089 45.27 MIGQQSMSSSSTQLYASRMGIYEPFHQINSWPNAFGSRLDTSISPITKVDDCVDNKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEEELERTRQQKGNGCLVDTSHIGFSGLVNPGIAAFEMEYNHWVEEQQRQINELRKALQVHTTDIELQILVESSLNHYHNLFCMKAKVAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLKPYLEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIAGDPIGSYISQMGDGMEKFEALESFISQADHLRQQTLKRMSHLLTTRQAAQGLLALGEYFHRLRVLSSLWATRPREPA* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22258809 22262614 - CsaV3_2G033550.1 Csa02g02536 520593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02536 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Csa02g02536 362 ProSiteProfiles DOG1 domain profile. 149 357 IPR025422 GO:0006351|GO:0043565
Csa02g02536 362 Pfam Seed dormancy control 166 241 IPR025422 GO:0006351|GO:0043565
Csa02g02536 362 Pfam bZIP transcription factor 80 120 IPR004827 GO:0003700|GO:0006355
Csa02g02536 362 Gene3D - 80 131 - -
Csa02g02536 362 Coils Coil 248 268 - -
Csa02g02536 362 PANTHER TRANSCRIPTION FACTOR TGA7 7 361 - -
Csa02g02536 362 Coils Coil 160 180 - -
Csa02g02536 362 PANTHER TRANSCRIPTION FACTOR TGA9 7 361 - -
Csa02g02536 362 SUPERFAMILY Leucine zipper domain 81 125 IPR046347 GO:0003700|GO:0006355
Csa02g02536 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 123 IPR004827 GO:0003700|GO:0006355
Csa02g02536 362 Coils Coil 100 127 - -
Csa02g02536 362 SMART brlzneu 77 139 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02536 Csa-Chr2:22258809 Csa04g00489 Csa-Chr4:3209914 1.67E-126 dispersed
Csa06g03709 Csa-Chr6:29661705 Csa02g02536 Csa-Chr2:22258809 1.41E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31040 PF14144 DOG1 1.10E-28 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02536 K14431 - csv:101217648 706.057