Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02536 ATGATTGGTCAGCAGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGAATGGGCATCTATGAGCCATTTCATCAGATCAACTCATGGCCAAATGCATTTGGTAGCCGACTAGATACGAGCATATCACCTATTACTAAAGTGGACGACTGTGTTGACAATAAACCCGAGTTTGTTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGACGATAAGGTACAAAGACGTTTAGCACAAAACCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGGAGGAGCTAGAAAGAACTAGGCAACAGAAGGGTAACGGCTGCTTAGTCGACACCAGTCACATCGGATTCAGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCAACGAACTTAGAAAGGCGCTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTATTTTGCATGAAAGCCAAAGTTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTGTTTGGAGATCATCGGCAGAGCGATTTTTCCTCTGGATAGGCGGATTTCGCCCTTCGGAACTGCTAAATGTTCTCAAACCATACCTCGAGCCTTTAAATGAACAACAAAGAGCAGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCCGAAGATGCACTCACTCAAGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCGGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAATTTGAAGCATTGGAGAGCTTCATAAGCCAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACCTCCTAACCACGAGACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGTGTTCTTAGTTCGCTCTGGGCCACTCGACCTCGTGAACCTGCGTAG 1089 45.27 MIGQQSMSSSSTQLYASRMGIYEPFHQINSWPNAFGSRLDTSISPITKVDDCVDNKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEEELERTRQQKGNGCLVDTSHIGFSGLVNPGIAAFEMEYNHWVEEQQRQINELRKALQVHTTDIELQILVESSLNHYHNLFCMKAKVAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLKPYLEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIAGDPIGSYISQMGDGMEKFEALESFISQADHLRQQTLKRMSHLLTTRQAAQGLLALGEYFHRLRVLSSLWATRPREPA* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22258809 22262614 - CsaV3_2G033550.1 Csa02g02536 520593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02536 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Csa02g02536 362 ProSiteProfiles DOG1 domain profile. 149 357 IPR025422 GO:0006351|GO:0043565
Csa02g02536 362 Pfam Seed dormancy control 166 241 IPR025422 GO:0006351|GO:0043565
Csa02g02536 362 Pfam bZIP transcription factor 80 120 IPR004827 GO:0003700|GO:0006355
Csa02g02536 362 Gene3D - 80 131 - -
Csa02g02536 362 Coils Coil 248 268 - -
Csa02g02536 362 PANTHER TRANSCRIPTION FACTOR TGA7 7 361 - -
Csa02g02536 362 Coils Coil 160 180 - -
Csa02g02536 362 PANTHER TRANSCRIPTION FACTOR TGA9 7 361 - -
Csa02g02536 362 SUPERFAMILY Leucine zipper domain 81 125 IPR046347 GO:0003700|GO:0006355
Csa02g02536 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 123 IPR004827 GO:0003700|GO:0006355
Csa02g02536 362 Coils Coil 100 127 - -
Csa02g02536 362 SMART brlzneu 77 139 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02536 K14431 TGA; transcription factor TGA - csv:101217648 706.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02536 Csa-Chr2:22258809 Csa04g00489 Csa-Chr4:3209914 1.67E-126 dispersed
Csa06g03709 Csa-Chr6:29661705 Csa02g02536 Csa-Chr2:22258809 1.41E-08 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00131 . 1 343 bZIP Transcription Factor Family AT2G35530 67.6 1.4e-107 386.7
Csa03g04575 . 1 344 bZIP Transcription Factor Family AT2G35530 62.5 1.4e-102 370.2
Csa05g00893 . 3 345 bZIP Transcription Factor Family AT2G40620 56.4 1.2e-86 317.0
Csa06g01114 CCT 65 397 bZIP Transcription Factor Family AT2G40620 50.3 1.8e-69 260.0
Csa06g00532 . 1 139 bZIP Transcription Factor Family AT2G40620 66.9 1.5e-39 160.6
Csa07g00051 . 382 546 bZIP Transcription Factor Family AT2G40620 59.4 4.8e-38 155.6
Csa07g00052 . 396 526 bZIP Transcription Factor Family AT2G40620 67.9 4.8e-38 155.6
Csa02g01394 CCT 1 233 bZIP Transcription Factor Family AT4G35040 62.6 5.5e-65 244.6
Csa07g00098 CCT 1 265 bZIP Transcription Factor Family AT4G35040 59.0 2.2e-61 232.6
Csa06g02195 . 6 334 bZIP Transcription Factor Family AT5G06950 80.4 7.3e-139 490.3
Csa05g02868 . 1 332 bZIP Transcription Factor Family AT5G06950 76.5 1.1e-131 466.5
Csa03g03707 . 114 446 bZIP Transcription Factor Family AT5G06950 73.0 8.1e-122 433.7
Csa06g00336 . 135 467 bZIP Transcription Factor Family AT5G06950 69.6 2.7e-117 418.7
Csa03g03598 . 223 517 bZIP Transcription Factor Family AT5G06950 60.6 3.9e-92 335.1
Csa01g01468 . 176 459 bZIP Transcription Factor Family AT5G06950 56.8 2.1e-85 312.8
Csa02g02536 . 78 360 bZIP Transcription Factor Family AT5G06950 53.3 4.8e-74 275.0
Csa04g00489 . 78 354 bZIP Transcription Factor Family AT5G06950 53.3 1.0e-71 267.3
Csa06g01300 . 195 429 bZIP Transcription Factor Family AT5G06950 56.1 1.5e-67 253.4
Csa01g01468 . 174 489 bZIP Transcription Factor Family AT1G08320 72.8 1.8e-127 452.6
Csa06g02195 . 46 333 bZIP Transcription Factor Family AT1G08320 62.8 3.4e-97 352.1
Csa03g03598 . 200 517 bZIP Transcription Factor Family AT1G08320 58.8 8.3e-96 347.4
Csa05g02868 . 44 331 bZIP Transcription Factor Family AT1G08320 61.1 1.3e-93 340.1
Csa03g03707 . 155 445 bZIP Transcription Factor Family AT1G08320 60.8 5.0e-93 338.2
Csa06g00336 . 173 466 bZIP Transcription Factor Family AT1G08320 57.8 4.4e-89 325.1
Csa06g01300 . 193 429 bZIP Transcription Factor Family AT1G08320 66.8 1.8e-82 303.1
Csa02g01394 CCT 1 261 bZIP Transcription Factor Family AT2G16770 58.8 2.0e-64 242.7
Csa07g00098 CCT 1 265 bZIP Transcription Factor Family AT2G16770 57.5 2.1e-61 232.6
Csa06g02195 . 25 334 bZIP Transcription Factor Family AT5G06960 80.6 1.1e-128 456.4
Csa05g02868 . 32 332 bZIP Transcription Factor Family AT5G06960 77.1 3.5e-119 424.9
Csa03g03707 . 135 446 bZIP Transcription Factor Family AT5G06960 70.9 2.3e-110 395.6
Csa06g00336 . 161 467 bZIP Transcription Factor Family AT5G06960 68.1 7.7e-106 380.6
Csa03g03598 . 209 517 bZIP Transcription Factor Family AT5G06960 59.9 2.0e-90 329.3
Csa01g01468 . 176 459 bZIP Transcription Factor Family AT5G06960 56.5 5.4e-83 304.7
Csa02g02536 . 69 360 bZIP Transcription Factor Family AT5G06960 52.3 3.8e-73 271.9
Csa04g00489 . 53 354 bZIP Transcription Factor Family AT5G06960 50.6 1.5e-69 260.0
Csa06g01300 . 195 429 bZIP Transcription Factor Family AT5G06960 55.3 5.4e-67 251.5
Csa07g00051 . 1 564 bZIP Transcription Factor Family AT4G38900 55.4 8.1e-135 477.6
Csa07g00052 . 1 567 bZIP Transcription Factor Family AT4G38900 57.2 9.9e-133 470.7
Csa07g01423 . 99 280 bZIP Transcription Factor Family AT4G38900 55.4 2.7e-37 153.7
Csa05g00893 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 7.8e-37 152.1
Csa03g01585 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.0e-36 151.8
Csa07g00052 . 65 567 bZIP Transcription Factor Family AT2G21230 52.5 2.0e-98 356.7
Csa07g01423 . 99 280 bZIP Transcription Factor Family AT2G21230 56.8 5.1e-38 156.0
Csa07g00329 . 1 245 bZIP Transcription Factor Family AT2G42380 55.3 5.7e-57 218.0
Csa02g01943 . 27 353 bZIP Transcription Factor Family AT1G45249 55.5 7.0e-83 304.7
Csa06g03222 . 1 364 bZIP Transcription Factor Family AT4G36730 50.3 8.4e-60 227.6
Csa06g02195 . 6 334 bZIP Transcription Factor Family AT3G12250 80.5 1.2e-138 489.6
Csa05g02868 . 1 332 bZIP Transcription Factor Family AT3G12250 76.2 1.3e-130 463.0
Csa03g03707 . 114 446 bZIP Transcription Factor Family AT3G12250 73.4 1.1e-121 433.3
Csa06g00336 . 135 467 bZIP Transcription Factor Family AT3G12250 68.8 8.7e-116 413.7
Csa03g03598 . 223 517 bZIP Transcription Factor Family AT3G12250 59.9 4.4e-91 331.6
Csa01g01468 . 176 459 bZIP Transcription Factor Family AT3G12250 56.8 3.0e-84 308.9
Csa02g02536 . 69 360 bZIP Transcription Factor Family AT3G12250 52.3 3.7e-74 275.4
Csa04g00489 . 47 354 bZIP Transcription Factor Family AT3G12250 50.9 5.9e-72 268.1
Csa06g01300 . 195 429 bZIP Transcription Factor Family AT3G12250 57.4 8.0e-69 257.7
Csa06g00336 . 15 467 bZIP Transcription Factor Family AT1G68640 62.2 1.3e-141 500.0
Csa06g02195 . 6 334 bZIP Transcription Factor Family AT1G68640 67.2 1.0e-114 410.6
Csa03g03707 . 112 446 bZIP Transcription Factor Family AT1G68640 66.0 1.0e-111 400.6
Csa05g02868 . 1 332 bZIP Transcription Factor Family AT1G68640 64.5 1.7e-109 393.3
Csa03g03598 . 211 517 bZIP Transcription Factor Family AT1G68640 55.3 4.0e-87 318.9
Csa01g01468 . 181 459 bZIP Transcription Factor Family AT1G68640 57.1 4.4e-86 315.5
Csa07g01423 . 10 291 bZIP Transcription Factor Family AT1G43700 52.1 3.6e-64 242.3
Csa06g00532 . 1 163 bZIP Transcription Factor Family AT1G43700 61.4 5.4e-44 175.3
Csa03g01585 . 42 370 bZIP Transcription Factor Family AT2G31370 71.0 2.6e-114 409.1
Csa03g01596 . 46 362 bZIP Transcription Factor Family AT2G31370 67.1 3.5e-103 372.1
Csa05g00893 . 25 248 bZIP Transcription Factor Family AT2G31370 52.5 5.0e-49 192.2
Csa06g00532 . 1 128 bZIP Transcription Factor Family AT2G31370 67.2 1.7e-36 150.6
Csa06g00456 . 17 322 bZIP Transcription Factor Family AT3G56850 56.6 4.5e-71 265.0
Csa03g00131 . 1 345 bZIP Transcription Factor Family AT1G32150 63.3 2.7e-100 362.5
Csa03g04575 . 1 345 bZIP Transcription Factor Family AT1G32150 60.7 2.8e-97 352.4
Csa03g01585 . 10 365 bZIP Transcription Factor Family AT1G06070 69.4 5.9e-125 444.5
Csa03g01596 . 1 360 bZIP Transcription Factor Family AT1G06070 67.8 7.0e-118 421.0
Csa06g00532 . 1 164 bZIP Transcription Factor Family AT1G06070 58.9 6.5e-39 158.7
Csa07g00051 . 382 546 bZIP Transcription Factor Family AT1G06070 57.5 1.1e-38 157.9
Csa07g00052 . 384 516 bZIP Transcription Factor Family AT1G06070 66.7 2.1e-37 153.7
Csa02g01943 . 27 353 bZIP Transcription Factor Family AT1G45249 55.5 7.0e-83 304.7
Csa03g00131 . 1 343 bZIP Transcription Factor Family AT2G35530 67.6 1.4e-107 386.7
Csa03g04575 . 1 344 bZIP Transcription Factor Family AT2G35530 62.5 1.4e-102 370.2
Csa05g00893 . 3 345 bZIP Transcription Factor Family AT2G40620 56.4 1.2e-86 317.0
Csa06g01114 CCT 65 397 bZIP Transcription Factor Family AT2G40620 50.3 1.8e-69 260.0
Csa06g00532 . 1 139 bZIP Transcription Factor Family AT2G40620 66.9 1.5e-39 160.6
Csa07g00051 . 382 546 bZIP Transcription Factor Family AT2G40620 59.4 4.8e-38 155.6
Csa07g00052 . 396 526 bZIP Transcription Factor Family AT2G40620 67.9 4.8e-38 155.6
Csa02g01394 CCT 1 233 bZIP Transcription Factor Family AT4G35040 62.6 5.5e-65 244.6
Csa07g00098 CCT 1 265 bZIP Transcription Factor Family AT4G35040 59.0 2.2e-61 232.6
Csa06g02195 . 6 334 bZIP Transcription Factor Family AT5G06950 80.4 7.3e-139 490.3
Csa05g02868 . 1 332 bZIP Transcription Factor Family AT5G06950 76.5 1.1e-131 466.5
Csa03g03707 . 114 446 bZIP Transcription Factor Family AT5G06950 73.0 8.1e-122 433.7
Csa06g00336 . 135 467 bZIP Transcription Factor Family AT5G06950 69.6 2.7e-117 418.7
Csa03g03598 . 223 517 bZIP Transcription Factor Family AT5G06950 60.6 3.9e-92 335.1
Csa01g01468 . 176 459 bZIP Transcription Factor Family AT5G06950 56.8 2.1e-85 312.8
Csa02g02536 . 78 360 bZIP Transcription Factor Family AT5G06950 53.3 4.8e-74 275.0
Csa04g00489 . 78 354 bZIP Transcription Factor Family AT5G06950 53.3 1.0e-71 267.3
Csa06g01300 . 195 429 bZIP Transcription Factor Family AT5G06950 56.1 1.5e-67 253.4
Csa01g01468 . 174 489 bZIP Transcription Factor Family AT1G08320 72.8 1.8e-127 452.6
Csa06g02195 . 46 333 bZIP Transcription Factor Family AT1G08320 62.8 3.4e-97 352.1
Csa03g03598 . 200 517 bZIP Transcription Factor Family AT1G08320 58.8 8.3e-96 347.4
Csa05g02868 . 44 331 bZIP Transcription Factor Family AT1G08320 61.1 1.3e-93 340.1
Csa03g03707 . 155 445 bZIP Transcription Factor Family AT1G08320 60.8 5.0e-93 338.2
Csa06g00336 . 173 466 bZIP Transcription Factor Family AT1G08320 57.8 4.4e-89 325.1
Csa06g01300 . 193 429 bZIP Transcription Factor Family AT1G08320 66.8 1.8e-82 303.1
Csa02g01394 CCT 1 261 bZIP Transcription Factor Family AT2G16770 58.8 2.0e-64 242.7
Csa07g00098 CCT 1 265 bZIP Transcription Factor Family AT2G16770 57.5 2.1e-61 232.6
Csa06g02195 . 25 334 bZIP Transcription Factor Family AT5G06960 80.6 1.1e-128 456.4
Csa05g02868 . 32 332 bZIP Transcription Factor Family AT5G06960 77.1 3.5e-119 424.9
Csa03g03707 . 135 446 bZIP Transcription Factor Family AT5G06960 70.9 2.3e-110 395.6
Csa06g00336 . 161 467 bZIP Transcription Factor Family AT5G06960 68.1 7.7e-106 380.6
Csa03g03598 . 209 517 bZIP Transcription Factor Family AT5G06960 59.9 2.0e-90 329.3
Csa01g01468 . 176 459 bZIP Transcription Factor Family AT5G06960 56.5 5.4e-83 304.7
Csa02g02536 . 69 360 bZIP Transcription Factor Family AT5G06960 52.3 3.8e-73 271.9
Csa04g00489 . 53 354 bZIP Transcription Factor Family AT5G06960 50.6 1.5e-69 260.0
Csa06g01300 . 195 429 bZIP Transcription Factor Family AT5G06960 55.3 5.4e-67 251.5
Csa07g00051 . 1 564 bZIP Transcription Factor Family AT4G38900 55.4 8.1e-135 477.6
Csa07g00052 . 1 567 bZIP Transcription Factor Family AT4G38900 57.2 9.9e-133 470.7
Csa07g01423 . 99 280 bZIP Transcription Factor Family AT4G38900 55.4 2.7e-37 153.7
Csa05g00893 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 7.8e-37 152.1
Csa03g01585 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.0e-36 151.8
Csa07g00052 . 65 567 bZIP Transcription Factor Family AT2G21230 52.5 2.0e-98 356.7
Csa07g01423 . 99 280 bZIP Transcription Factor Family AT2G21230 56.8 5.1e-38 156.0
Csa07g00329 . 1 245 bZIP Transcription Factor Family AT2G42380 55.3 5.7e-57 218.0
Csa06g03222 . 1 364 bZIP Transcription Factor Family AT4G36730 50.3 8.4e-60 227.6
Csa06g02195 . 6 334 bZIP Transcription Factor Family AT3G12250 80.5 1.2e-138 489.6
Csa05g02868 . 1 332 bZIP Transcription Factor Family AT3G12250 76.2 1.3e-130 463.0
Csa03g03707 . 114 446 bZIP Transcription Factor Family AT3G12250 73.4 1.1e-121 433.3
Csa06g00336 . 135 467 bZIP Transcription Factor Family AT3G12250 68.8 8.7e-116 413.7
Csa03g03598 . 223 517 bZIP Transcription Factor Family AT3G12250 59.9 4.4e-91 331.6
Csa01g01468 . 176 459 bZIP Transcription Factor Family AT3G12250 56.8 3.0e-84 308.9
Csa02g02536 . 69 360 bZIP Transcription Factor Family AT3G12250 52.3 3.7e-74 275.4
Csa04g00489 . 47 354 bZIP Transcription Factor Family AT3G12250 50.9 5.9e-72 268.1
Csa06g01300 . 195 429 bZIP Transcription Factor Family AT3G12250 57.4 8.0e-69 257.7
Csa06g00336 . 15 467 bZIP Transcription Factor Family AT1G68640 62.2 1.3e-141 500.0
Csa06g02195 . 6 334 bZIP Transcription Factor Family AT1G68640 67.2 1.0e-114 410.6
Csa03g03707 . 112 446 bZIP Transcription Factor Family AT1G68640 66.0 1.0e-111 400.6
Csa05g02868 . 1 332 bZIP Transcription Factor Family AT1G68640 64.5 1.7e-109 393.3
Csa03g03598 . 211 517 bZIP Transcription Factor Family AT1G68640 55.3 4.0e-87 318.9
Csa01g01468 . 181 459 bZIP Transcription Factor Family AT1G68640 57.1 4.4e-86 315.5
Csa07g01423 . 10 291 bZIP Transcription Factor Family AT1G43700 52.1 3.6e-64 242.3
Csa06g00532 . 1 163 bZIP Transcription Factor Family AT1G43700 61.4 5.4e-44 175.3
Csa03g01585 . 42 370 bZIP Transcription Factor Family AT2G31370 71.0 2.6e-114 409.1
Csa03g01596 . 46 362 bZIP Transcription Factor Family AT2G31370 67.1 3.5e-103 372.1
Csa05g00893 . 25 248 bZIP Transcription Factor Family AT2G31370 52.5 5.0e-49 192.2
Csa06g00532 . 1 128 bZIP Transcription Factor Family AT2G31370 67.2 1.7e-36 150.6
Csa06g00456 . 17 322 bZIP Transcription Factor Family AT3G56850 56.6 4.5e-71 265.0
Csa03g00131 . 1 345 bZIP Transcription Factor Family AT1G32150 63.3 2.7e-100 362.5
Csa03g04575 . 1 345 bZIP Transcription Factor Family AT1G32150 60.7 2.8e-97 352.4
Csa03g01585 . 10 365 bZIP Transcription Factor Family AT1G06070 69.4 5.9e-125 444.5
Csa03g01596 . 1 360 bZIP Transcription Factor Family AT1G06070 67.8 7.0e-118 421.0
Csa06g00532 . 1 164 bZIP Transcription Factor Family AT1G06070 58.9 6.5e-39 158.7
Csa07g00051 . 382 546 bZIP Transcription Factor Family AT1G06070 57.5 1.1e-38 157.9
Csa07g00052 . 384 516 bZIP Transcription Factor Family AT1G06070 66.7 2.1e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002529 2 5 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 0 1 13 7 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31040 PF14144 DOG1 1.10E-28 No_clan Csa TF