Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02536 | ATGATTGGTCAGCAGAGTATGAGCTCTTCATCAACTCAACTCTATGCTTCAAGAATGGGCATCTATGAGCCATTTCATCAGATCAACTCATGGCCAAATGCATTTGGTAGCCGACTAGATACGAGCATATCACCTATTACTAAAGTGGACGACTGTGTTGACAATAAACCCGAGTTTGTTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGACGATAAGGTACAAAGACGTTTAGCACAAAACCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAACTGGCACAGTTGGAGGAGGAGCTAGAAAGAACTAGGCAACAGAAGGGTAACGGCTGCTTAGTCGACACCAGTCACATCGGATTCAGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCAACGAACTTAGAAAGGCGCTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTATTTTGCATGAAAGCCAAAGTTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTGTTTGGAGATCATCGGCAGAGCGATTTTTCCTCTGGATAGGCGGATTTCGCCCTTCGGAACTGCTAAATGTTCTCAAACCATACCTCGAGCCTTTAAATGAACAACAAAGAGCAGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCCGAAGATGCACTCACTCAAGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCGGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAATTTGAAGCATTGGAGAGCTTCATAAGCCAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACCTCCTAACCACGAGACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGTGTTCTTAGTTCGCTCTGGGCCACTCGACCTCGTGAACCTGCGTAG | 1089 | 45.27 | MIGQQSMSSSSTQLYASRMGIYEPFHQINSWPNAFGSRLDTSISPITKVDDCVDNKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEEELERTRQQKGNGCLVDTSHIGFSGLVNPGIAAFEMEYNHWVEEQQRQINELRKALQVHTTDIELQILVESSLNHYHNLFCMKAKVAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLKPYLEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIAGDPIGSYISQMGDGMEKFEALESFISQADHLRQQTLKRMSHLLTTRQAAQGLLALGEYFHRLRVLSSLWATRPREPA* | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22258809 | 22262614 | - | CsaV3_2G033550.1 | Csa02g02536 | 520593 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02536 | 362 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 84 | 99 | IPR004827 | GO:0003700|GO:0006355 | |
Csa02g02536 | 362 | ProSiteProfiles | DOG1 domain profile. | 149 | 357 | IPR025422 | GO:0006351|GO:0043565 | |
Csa02g02536 | 362 | Pfam | Seed dormancy control | 166 | 241 | IPR025422 | GO:0006351|GO:0043565 | |
Csa02g02536 | 362 | Pfam | bZIP transcription factor | 80 | 120 | IPR004827 | GO:0003700|GO:0006355 | |
Csa02g02536 | 362 | Gene3D | - | 80 | 131 | - | - | |
Csa02g02536 | 362 | Coils | Coil | 248 | 268 | - | - | |
Csa02g02536 | 362 | PANTHER | TRANSCRIPTION FACTOR TGA7 | 7 | 361 | - | - | |
Csa02g02536 | 362 | Coils | Coil | 160 | 180 | - | - | |
Csa02g02536 | 362 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 7 | 361 | - | - | |
Csa02g02536 | 362 | SUPERFAMILY | Leucine zipper domain | 81 | 125 | IPR046347 | GO:0003700|GO:0006355 | |
Csa02g02536 | 362 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 79 | 123 | IPR004827 | GO:0003700|GO:0006355 | |
Csa02g02536 | 362 | Coils | Coil | 100 | 127 | - | - | |
Csa02g02536 | 362 | SMART | brlzneu | 77 | 139 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02536 | Csa-Chr2:22258809 | Csa04g00489 | Csa-Chr4:3209914 | 1.67E-126 | dispersed | |
Csa06g03709 | Csa-Chr6:29661705 | Csa02g02536 | Csa-Chr2:22258809 | 1.41E-08 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31040 | PF14144 | DOG1 | 1.10E-28 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02536 | K14431 | - | csv:101217648 | 706.057 |