Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02588 ATGGGTCGGTGGAATGACAAACTTGTTGCCTTTATCAACAATAGATGGTTGGTTTTTGTTGCTGCAATATGGCTTCAATCTTGGGCTGGAATTGGATATCTTTTTGGAAGTATATCGCCGATAATCAAAACCAATTTGAGTTACAATCAGAGACAAATTTCTCGTCTTGGTGTCGCTAAGGATCTTGGCGATAGCGTTGGCTTTTTGGCTGCAACGTTAACGGAGATATTGCCCTTTTGGGGAAGTCTCTTGGTCGGTGCTATCCATAACTTTGTTGGGTATGGTTGGGTTTGGCTCATCGTCACTGGTCGAGCTCCCGTTTTGCCTCTCTGGGCTATGTGCGCTCTTGTATTTATTGGAACGAATGGGGAGACATACTTCAATACAGTTTCTTTGGTTTCTTGTGTACAAAACTTCCCGAAAAGCAGAGGCCCTGTGGTCGGGATTCTGAAAGGCTTTGCTGGTTTAAGTGGTGCTATTTTGACTCAGACATATGCAATCTTCCATTCTCCTGAATCAGCCAATCTTATATTTATGGTTGCAGTAGGCCCTGCACTGGTGGCTATTGGTGTGATGTTTTTTATCAGACCTGTTGCCGGTCATCGACAAGTAAGGCCGTCCGATGGCATGAGCTTTACTAGTGTTTATGGTGTCTGCCTCCTTTTGGCTGCATATTTGATGGGAGTCATGCTTATTGAGGATCTTGTTACCTTGAGCCCCATTGTGATAACCATATTTACTGTGGTTATGTTTGTCATCCTTCTTACGCCCTTTTTTATTCCCGTGTCATTGACTCTTAGCTCGGAGGCAACAACATATGCTGAGCAAGAGGCTCTCTTGCCACCGTCTGAGAAAGAGGAACCTGCTAGAACTGAGCCAGATGGTAATGAAGTGATATTTAGTGAGGTGGAAGATGAAAAATCCGAGGGAGAGGACTTACTTCCTGCATCAGAGAGACAAAAACGCATTGCTCAGTTGCAAGCAAAACTATTGCAAGCAGCCGCAGAAGGAGCAGTAAGAGTCAAGAGGAGGAAGGGTCCACGTCGAGGGGAAGACTTCACTTTGGGTCAAGCTTTAATCAAAGCAGACTTTTGGCTTATATTTTCCTCCCATCTTCTTGGTTCTGGAACTGGATTGACCGTGATCGATAACCTCGGACAGATGAGCCAGTCTTTAGGTTACGATAATACACATATCTTTGTATCCCTGATCAGCATATGGAACTTTCTCGGCCGTGTGGGTGGTGGATATCTATCTGAGATTGTTGTGAGAGATTTTGCTTATCCAAGACCCATAGCAATGACGATTGCGCAAGTCCTTATGATATTTGGACATGTCTTCATCGGTATGGGATGGCCCGGGGCAATGTACATTGGCACTCTCATAACGGGGCTCGGGTACGGGGCTCACTGGGCCATTGTACCTGCTACTGCCTCCGAATTGTTTGGGTTGAAAAAGTTTGGCGCTTTGTACAACTTCATCACTCTCTCAACTCCTATGGGATCTTTGGTATTTTCTGGCTTAATCGCGAGCAGTATATATGATAGTGAAGCCGAGAAGCAAGCTCGTAATCATCTCACACAGTTCCAAAGCTCCTCGTCATTTTGGTTCACCAGACTTTACACAGAGGGACCGCACAAGTGCGAGGGCGCCATATGCTTCTTTTTAACTTGTATGATAATGGGTGGATTCTGCGCGATTGCAGCGATATTAAGTTTAATTTTGGTGCACCGGACAAAGGGTGTTTACCACAACCTCTATGGAAAATCTCGTACATCAACACTTTCATAG 1791 45.0 MGRWNDKLVAFINNRWLVFVAAIWLQSWAGIGYLFGSISPIIKTNLSYNQRQISRLGVAKDLGDSVGFLAATLTEILPFWGSLLVGAIHNFVGYGWVWLIVTGRAPVLPLWAMCALVFIGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQTYAIFHSPESANLIFMVAVGPALVAIGVMFFIRPVAGHRQVRPSDGMSFTSVYGVCLLLAAYLMGVMLIEDLVTLSPIVITIFTVVMFVILLTPFFIPVSLTLSSEATTYAEQEALLPPSEKEEPARTEPDGNEVIFSEVEDEKSEGEDLLPASERQKRIAQLQAKLLQAAAEGAVRVKRRKGPRRGEDFTLGQALIKADFWLIFSSHLLGSGTGLTVIDNLGQMSQSLGYDNTHIFVSLISIWNFLGRVGGGYLSEIVVRDFAYPRPIAMTIAQVLMIFGHVFIGMGWPGAMYIGTLITGLGYGAHWAIVPATASELFGLKKFGALYNFITLSTPMGSLVFSGLIASSIYDSEAEKQARNHLTQFQSSSSFWFTRLYTEGPHKCEGAICFFLTCMIMGGFCAIAAILSLILVHRTKGVYHNLYGKSRTSTLS* 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22567066 22570631 + CsaV3_2G034070.1 Csa02g02588 520645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02588 596 CDD MFS_Mch1p_like 15 569 - -
Csa02g02588 596 Gene3D MFS general substrate transporter like domains 364 589 IPR036259 -
Csa02g02588 596 SUPERFAMILY MFS general substrate transporter 212 582 IPR036259 -
Csa02g02588 596 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 4 592 - -
Csa02g02588 596 SUPERFAMILY MFS general substrate transporter 10 202 IPR036259 -
Csa02g02588 596 Pfam Nodulin-like 15 262 IPR010658 -
Csa02g02588 596 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 4 592 - -
Csa02g02588 596 Coils Coil 316 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02588 Csa-Chr2:22567066 Csa04g00183 Csa-Chr4:1049693 1.15E-109 dispersed
Csa02g02588 Csa-Chr2:22567066 Csa02g01375 Csa-Chr2:13204393 1.06E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02588 - - csv:101211655 1158.67