Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02630 ATGATTGAGAAAATGGCCGACGACGAATTCTCCAATTGTTTTCTCCAAATCCCCCTCACTGGATCCAACCCTTCTCTTCTCAAGAAGAAGAGAAACCTTCCGGGAACTCCAGATCCAGAAGCAGAAGTGATAGCGTTATCACCGAAGACATTGTTGGCCACGAACAGATTCATATGCGAAATATGCGGAAAGGGGTTTCAGAGAGACCAGAACTTGCAGTTACACAGGCGAGGGCATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAAGCAAAGAAAAGAGTGTATGTATGTCCTGAGAAAAGCTGTGTGCATCATCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGTTCAAAGAGATATGCTGTACAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACACTATTTTCAAGGAGAGATAGCTTCATAACTCACAGGGCATTTTGTGATGCGTTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATTTGAACTATAATTTAATGGGAGGATGGAGAGATCATGATGAAACAGCAGGGATATTCATGACTCAACATTTCGGTTCATCAATGAAGCCGGTTACAATGAAAATGAGCAGTAATAGTGTTCAAATGATTGGAGGAATGATGATGAATAATTCAGGAGGGGGAATGTACGGTGAAGATTCAGTTTGGGGAAATCAAGTACAAATGGGGAATTATTATTATAATGAAAATCAAGGGTTAATGGTGAATAATGGAGGAAGGGTTTGTTCACTATACAGCCATGAATTTCAGCAAGTAAATGAAACCCAGATGGGAAATATGTCAGCAACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGGCAACTTCATCTGCTTCTTCTAACACTGTTACAAGATCTGCAGCCCCATCATTATCACTACTACAAATTCAACAACAAGGTTTTTTGTTTAATAATGGGAGTGAGTTTTGTAATACAAATAATAATCCAATTGTTGTAGTTGAGAATAATGGGAGTGAGATGTACACTGCAAAACGGCGTCGTAGTCAGAGTGAATTTGAGTGTGGAAATGGAAATGGAACAACGGGAACAGGAACTGGGGAGACAAGGGATTTTCTTGGAGTTGGTGCCAAAACTATATGTCACGCCTCAACATCAATCAACGGATGGATTTAG 1269 39.8 MIEKMADDEFSNCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLLATNRFICEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNLNYNLMGGWRDHDETAGIFMTQHFGSSMKPVTMKMSSNSVQMIGGMMMNNSGGGMYGEDSVWGNQVQMGNYYYNENQGLMVNNGGRVCSLYSHEFQQVNETQMGNMSATALLQKAAEIGATSSASSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCNTNNNPIVVVENNGSEMYTAKRRRSQSEFECGNGNGTTGTGTGETRDFLGVGAKTICHASTSINGWI* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22847054 22848872 - CsaV3_2G034490.1 Csa02g02630 520687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02630 422 Gene3D Classic Zinc Finger 90 181 - -
Csa02g02630 422 SMART c2h2final6 133 153 IPR013087 -
Csa02g02630 422 SMART c2h2final6 57 79 IPR013087 -
Csa02g02630 422 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 415 - -
Csa02g02630 422 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Csa02g02630 422 PANTHER ZINC FINGER PROTEIN MAGPIE 24 415 - -
Csa02g02630 422 Gene3D Classic Zinc Finger 53 80 - -
Csa02g02630 422 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Csa02g02630 422 MobiDBLite consensus disorder prediction 384 398 - -
Csa02g02630 422 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Csa02g02630 422 MobiDBLite consensus disorder prediction 378 398 - -
Csa02g02630 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02773 Csa-Chr1:24495683 Csa02g02630 Csa-Chr2:22847054 1.78E-105 dispersed
Csa02g02630 Csa-Chr2:22847054 Csa06g03225 Csa-Chr6:27277593 5.83E-113 dispersed
Csa06g02557 Csa-Chr6:22648905 Csa02g02630 Csa-Chr2:22847054 3.46E-116 dispersed
Csa01g01294 Csa-Chr1:8215758 Csa02g02630 Csa-Chr2:22847054 9.43E-115 transposed
Csa02g02630 Csa-Chr2:22847054 Csa07g00313 Csa-Chr7:2338789 6.76E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31048 PF00096 zf-C2H2 0.0048 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02630 K25870 - csv:101211656 852.432