Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02630 | ATGATTGAGAAAATGGCCGACGACGAATTCTCCAATTGTTTTCTCCAAATCCCCCTCACTGGATCCAACCCTTCTCTTCTCAAGAAGAAGAGAAACCTTCCGGGAACTCCAGATCCAGAAGCAGAAGTGATAGCGTTATCACCGAAGACATTGTTGGCCACGAACAGATTCATATGCGAAATATGCGGAAAGGGGTTTCAGAGAGACCAGAACTTGCAGTTACACAGGCGAGGGCATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAAGCAAAGAAAAGAGTGTATGTATGTCCTGAGAAAAGCTGTGTGCATCATCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGTTCAAAGAGATATGCTGTACAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACACTATTTTCAAGGAGAGATAGCTTCATAACTCACAGGGCATTTTGTGATGCGTTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATTTGAACTATAATTTAATGGGAGGATGGAGAGATCATGATGAAACAGCAGGGATATTCATGACTCAACATTTCGGTTCATCAATGAAGCCGGTTACAATGAAAATGAGCAGTAATAGTGTTCAAATGATTGGAGGAATGATGATGAATAATTCAGGAGGGGGAATGTACGGTGAAGATTCAGTTTGGGGAAATCAAGTACAAATGGGGAATTATTATTATAATGAAAATCAAGGGTTAATGGTGAATAATGGAGGAAGGGTTTGTTCACTATACAGCCATGAATTTCAGCAAGTAAATGAAACCCAGATGGGAAATATGTCAGCAACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGGCAACTTCATCTGCTTCTTCTAACACTGTTACAAGATCTGCAGCCCCATCATTATCACTACTACAAATTCAACAACAAGGTTTTTTGTTTAATAATGGGAGTGAGTTTTGTAATACAAATAATAATCCAATTGTTGTAGTTGAGAATAATGGGAGTGAGATGTACACTGCAAAACGGCGTCGTAGTCAGAGTGAATTTGAGTGTGGAAATGGAAATGGAACAACGGGAACAGGAACTGGGGAGACAAGGGATTTTCTTGGAGTTGGTGCCAAAACTATATGTCACGCCTCAACATCAATCAACGGATGGATTTAG | 1269 | 39.8 | MIEKMADDEFSNCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLLATNRFICEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNLNYNLMGGWRDHDETAGIFMTQHFGSSMKPVTMKMSSNSVQMIGGMMMNNSGGGMYGEDSVWGNQVQMGNYYYNENQGLMVNNGGRVCSLYSHEFQQVNETQMGNMSATALLQKAAEIGATSSASSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCNTNNNPIVVVENNGSEMYTAKRRRSQSEFECGNGNGTTGTGTGETRDFLGVGAKTICHASTSINGWI* | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22847054 | 22848872 | - | CsaV3_2G034490.1 | Csa02g02630 | 520687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02630 | 422 | Gene3D | Classic Zinc Finger | 90 | 181 | - | - | |
Csa02g02630 | 422 | SMART | c2h2final6 | 133 | 153 | IPR013087 | - | |
Csa02g02630 | 422 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Csa02g02630 | 422 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 24 | 415 | - | - | |
Csa02g02630 | 422 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Csa02g02630 | 422 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 24 | 415 | - | - | |
Csa02g02630 | 422 | Gene3D | Classic Zinc Finger | 53 | 80 | - | - | |
Csa02g02630 | 422 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 153 | IPR036236 | - | |
Csa02g02630 | 422 | MobiDBLite | consensus disorder prediction | 384 | 398 | - | - | |
Csa02g02630 | 422 | Pfam | Zinc finger, C2H2 type | 57 | 79 | IPR013087 | - | |
Csa02g02630 | 422 | MobiDBLite | consensus disorder prediction | 378 | 398 | - | - | |
Csa02g02630 | 422 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02773 | Csa-Chr1:24495683 | Csa02g02630 | Csa-Chr2:22847054 | 1.78E-105 | dispersed | |
Csa02g02630 | Csa-Chr2:22847054 | Csa06g03225 | Csa-Chr6:27277593 | 5.83E-113 | dispersed | |
Csa06g02557 | Csa-Chr6:22648905 | Csa02g02630 | Csa-Chr2:22847054 | 3.46E-116 | dispersed | |
Csa01g01294 | Csa-Chr1:8215758 | Csa02g02630 | Csa-Chr2:22847054 | 9.43E-115 | transposed | |
Csa02g02630 | Csa-Chr2:22847054 | Csa07g00313 | Csa-Chr7:2338789 | 6.76E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31048 | PF00096 | zf-C2H2 | 0.0048 | CL0361 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02630 | K25870 | - | csv:101211656 | 852.432 |