Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02636 ATGCCGAAGGGTTTGAAGAGTAAATGTCAATCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTTACTAATCTTCAAAATGCAAGAAAGGAGAGTCGTACTACTGACGTTGCTGTCTTGGAGGAGCAAGTCCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAATGAACCTTCACCTGCATCTTCATTAGTTGAGGGTAGTCTTGGATCATTCTCACAAGAGTTAGCCCGTCTTCTTGAGCATTGTGATGAGCAAGATGATGCAACTAGTACATTGGCTGAACCAAAGGCTGAACCTGAACTCCACTGCATTCTTGGCAGCAATCCGTCAAATTTCGTACAGGATGGTTTTTGTATTCCAGAGCTCCAACACGAAAGTTTTTTCGGATTTGAGGAGTGCAAAGTGTCTCCTTTAGATATTCAGAATTATTCATTTTACAAATCGGACATGGCTACTCAGTCTAATTGTCAAAGTTTCAAATTAGATCAAAACTTAGAGCAGACCACGATGGTCAGTAAGGATGATATGTCTACTTTGAATTGCCATATATTGAATTCACAACCAGAGTTTGACTATGGGGTTCTTATTGGGGCATCGGATGTGGGAGACTTTATTCAGGACACAAAGCCCAGTATTCTCCCAAATATTGCACCCCGACCATCTGCTTTTATGGGCCCGATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCCAAATGGTGTCAGGACTATTGCAGTAGCTGTCATTCTGTTCTTGCTATAAACGAAGGCCTTCCTGGAATGATTCCAATATTGCGTCCTGGGGGAATTGGGTTTAAGGATGGTCCTTTGTTTGCTGCTCTTCAGGCAAAGACACAAGCCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAATCAGGGAATGGCTCTACTTCGACAAGCCTAGACGAGCCTTTGAGAGTGGCAATCGAAAGCAAAGGTCATTGCCGGATTATAGTGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGAAGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAGCCATCAAGCACTCTTGAATGGCATTTGTATGAGTATGATATCACCAATTATGATTCATTCGCATTATATAGGCTGGAACTCAAACATGCTGATACAAAAAAGAGTCCAAAGGGAAAATTGGCAGCGGATCCTCTGGCCGATCTTCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGCCCTGTTGAGCTTGGACAACAAGTTAAAGGCAAGATGACGATGAAGAGAAATAATTAA 1398 42.92 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSLVEGSLGSFSQELARLLEHCDEQDDATSTLAEPKAEPELHCILGSNPSNFVQDGFCIPELQHESFFGFEECKVSPLDIQNYSFYKSDMATQSNCQSFKLDQNLEQTTMVSKDDMSTLNCHILNSQPEFDYGVLIGASDVGDFIQDTKPSILPNIAPRPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALQAKTQAKEVGIPICDGAATRKSPWNAPELFDITFLEGETIREWLYFDKPRRAFESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSTLEWHLYEYDITNYDSFALYRLELKHADTKKSPKGKLAADPLADLQKKMGRLTAEGPVELGQQVKGKMTMKRNN* 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22956134 22959814 + CsaV3_2G034550.1 Csa02g02636 520693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02636 465 Coils Coil 18 38 - -
Csa02g02636 465 PANTHER TRANSCRIPTION FACTOR VOZ1 1 463 IPR039277 GO:0006355|GO:0048578
Csa02g02636 465 PANTHER TRANSCRIPTION FACTOR VOZ2 1 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02636 - - - csv:101211467 961.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01856 Csa-Chr4:18302368 Csa02g02636 Csa-Chr2:22956134 3.31E-40 transposed
Csa02g02636 Csa-Chr2:22956134 Csa06g03664 Csa-Chr6:29459015 1.84E-179 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g03664 . 2 484 VOZ-9 Transcription Factor Family AT1G28520 71.2 8.4e-200 693.3
Csa02g02636 . 6 450 VOZ-9 Transcription Factor Family AT1G28520 58.4 2.3e-133 472.6
Csa06g03664 . 27 422 VOZ-9 Transcription Factor Family AT2G42400 50.7 9.4e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31049 None None None None Csa TF