Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02636 ATGCCGAAGGGTTTGAAGAGTAAATGTCAATCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTTACTAATCTTCAAAATGCAAGAAAGGAGAGTCGTACTACTGACGTTGCTGTCTTGGAGGAGCAAGTCCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAATGAACCTTCACCTGCATCTTCATTAGTTGAGGGTAGTCTTGGATCATTCTCACAAGAGTTAGCCCGTCTTCTTGAGCATTGTGATGAGCAAGATGATGCAACTAGTACATTGGCTGAACCAAAGGCTGAACCTGAACTCCACTGCATTCTTGGCAGCAATCCGTCAAATTTCGTACAGGATGGTTTTTGTATTCCAGAGCTCCAACACGAAAGTTTTTTCGGATTTGAGGAGTGCAAAGTGTCTCCTTTAGATATTCAGAATTATTCATTTTACAAATCGGACATGGCTACTCAGTCTAATTGTCAAAGTTTCAAATTAGATCAAAACTTAGAGCAGACCACGATGGTCAGTAAGGATGATATGTCTACTTTGAATTGCCATATATTGAATTCACAACCAGAGTTTGACTATGGGGTTCTTATTGGGGCATCGGATGTGGGAGACTTTATTCAGGACACAAAGCCCAGTATTCTCCCAAATATTGCACCCCGACCATCTGCTTTTATGGGCCCGATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCCAAATGGTGTCAGGACTATTGCAGTAGCTGTCATTCTGTTCTTGCTATAAACGAAGGCCTTCCTGGAATGATTCCAATATTGCGTCCTGGGGGAATTGGGTTTAAGGATGGTCCTTTGTTTGCTGCTCTTCAGGCAAAGACACAAGCCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAATCAGGGAATGGCTCTACTTCGACAAGCCTAGACGAGCCTTTGAGAGTGGCAATCGAAAGCAAAGGTCATTGCCGGATTATAGTGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGAAGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAGCCATCAAGCACTCTTGAATGGCATTTGTATGAGTATGATATCACCAATTATGATTCATTCGCATTATATAGGCTGGAACTCAAACATGCTGATACAAAAAAGAGTCCAAAGGGAAAATTGGCAGCGGATCCTCTGGCCGATCTTCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGCCCTGTTGAGCTTGGACAACAAGTTAAAGGCAAGATGACGATGAAGAGAAATAATTAA 1398 42.92 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSLVEGSLGSFSQELARLLEHCDEQDDATSTLAEPKAEPELHCILGSNPSNFVQDGFCIPELQHESFFGFEECKVSPLDIQNYSFYKSDMATQSNCQSFKLDQNLEQTTMVSKDDMSTLNCHILNSQPEFDYGVLIGASDVGDFIQDTKPSILPNIAPRPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALQAKTQAKEVGIPICDGAATRKSPWNAPELFDITFLEGETIREWLYFDKPRRAFESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSTLEWHLYEYDITNYDSFALYRLELKHADTKKSPKGKLAADPLADLQKKMGRLTAEGPVELGQQVKGKMTMKRNN* 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22956134 22959814 + CsaV3_2G034550.1 Csa02g02636 520693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02636 465 Coils Coil 18 38 - -
Csa02g02636 465 PANTHER TRANSCRIPTION FACTOR VOZ1 1 463 IPR039277 GO:0006355|GO:0048578
Csa02g02636 465 PANTHER TRANSCRIPTION FACTOR VOZ2 1 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01856 Csa-Chr4:18302368 Csa02g02636 Csa-Chr2:22956134 3.31E-40 transposed
Csa02g02636 Csa-Chr2:22956134 Csa06g03664 Csa-Chr6:29459015 1.84E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31049 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02636 - - csv:101211467 961.059