Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02662 ATGGACTGGACTAGAGGCCACGTCATCGGCCACGGCTCCTCCGCCACCGTCTTCCTCGCTACCGATTCTCCCTCTCGCCATGTCTTCGCCGTCAAAACTGCCCAGCTTTCCCACTCCCAATCTCTACGAAAGGAGCAACAGTTTCTTTCTTCTTTAGCCTCTCCTTATATTGTTTCTTATAGAGGCTTTGAAGTCAGTAGAGAACAGAGTGGGGTCACGATGTTCAATCTTTTCATGGAGTATTTACCCAACGGCTCACTCGCCGACACAATTCGCCGCCGTGGAGGACAACGGCTCGACGAGGCAACCATTGTCATCTACACACGGCAGATACTAATGGGTCTACAGTACATTCATTCCAAAGGCATAGTACATTGCGACATTAAAGCCCGAAACATTTTGATTGGTCTAGACGGCGAGGCTAAATTGGCTGATTTCGGTTGCGCCAAGCGGGCAACAAGCCAAACGGATCCAATCTGCGGCACGCCGTTGTTCATGGCGCCGGAAGTAGCTCGTGGTGAACACCAAGGTTTCCCCTCCGACATTTGGTCAATTGGGTGTACAATTATCGAAATGGCCAGCGGTGGCGGCTCGCCTTGGCCAAAAACAACCGACGACACCGACCCGATTTCTGCTCTGTATAGAATTGGGTATTCCGGGGAGTCGCCGGAAATTCCATGTTATTTATCTGAAGAAGCAAAGGATTTCTTGGAGAAGTGTTTGAAAAGGAATCCAAGTGAGAGATGGACGGCGAGTGAGTTAATGAATCATCCATTTTTAAGGGAATTGAATTGTAGAAGGGAATGGAAAACGGAGGAAGTTCATTCAGAATCGCCGACGAGTATTCTAGAACAGGGGATATGGAGATCGATTGAAGAAAGTGAAATTAGAGGAAGGGAATTGGTAAGATCGAATGGTTGGGAGGCAGCGGCAGCAGAGGAGCAGATCCGACGGCTGTGGATGATTTCAGGGGAGCCCAGATGGGAAGAGGATGAGAATTGGATTACAATTAGAAGAAAAGAAGAAGGGGAGAAGAATGGTGGGGCAGATGAGTCAGAAGTGAAAAAATGTAGTAATTATTCTAACAATAATAATAATAATAATAGTAATTGGGGTGACAAAAAGAGAGGTAGTGGAGGGAAAGAGTGGTTGCAAATGGAATTAGGGAATATTAGTTGTAGAATTAGTAGGAATGATTTGGGAGACTATAGTTGTAGGAATGTTATTAGTCTTGTAAATAATAATTATCCTTTATCTTTTCATACACTTACACCTATATTTCTTCCTTTAATGCCAACAATATTATGA 1308 45.03 MDWTRGHVIGHGSSATVFLATDSPSRHVFAVKTAQLSHSQSLRKEQQFLSSLASPYIVSYRGFEVSREQSGVTMFNLFMEYLPNGSLADTIRRRGGQRLDEATIVIYTRQILMGLQYIHSKGIVHCDIKARNILIGLDGEAKLADFGCAKRATSQTDPICGTPLFMAPEVARGEHQGFPSDIWSIGCTIIEMASGGGSPWPKTTDDTDPISALYRIGYSGESPEIPCYLSEEAKDFLEKCLKRNPSERWTASELMNHPFLRELNCRREWKTEEVHSESPTSILEQGIWRSIEESEIRGRELVRSNGWEAAAAEEQIRRLWMISGEPRWEEDENWITIRRKEEGEKNGGADESEVKKCSNYSNNNNNNNSNWGDKKRGSGGKEWLQMELGNISCRISRNDLGDYSCRNVISLVNNNYPLSFHTLTPIFLPLMPTIL* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23201960 23203832 + CsaV3_2G034810.1 Csa02g02662 520719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02662 435 Gene3D Transferase(Phosphotransferase) domain 1 2 344 - -
Csa02g02662 435 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 352 - -
Csa02g02662 435 ProSiteProfiles Protein kinase domain profile. 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02662 435 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672|GO:0006468
Csa02g02662 435 PRINTS Tyrosine kinase catalytic domain signature 117 135 IPR001245 GO:0004672|GO:0006468
Csa02g02662 435 PRINTS Tyrosine kinase catalytic domain signature 180 202 IPR001245 GO:0004672|GO:0006468
Csa02g02662 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Csa02g02662 435 SMART serkin_6 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02662 435 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Csa02g02662 435 SUPERFAMILY Protein kinase-like (PK-like) 2 271 IPR011009 -
Csa02g02662 435 Pfam Protein kinase domain 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02662 435 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 18 2 352 - -
Csa02g02662 435 MobiDBLite consensus disorder prediction 355 374 - -
Csa02g02662 435 CDD STKc_MAPKKK 2 260 - -
Csa02g02662 435 MobiDBLite consensus disorder prediction 339 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02662 Csa-Chr2:23201960 Csa07g01108 Csa-Chr7:10703813 2.03E-103 dispersed
Csa07g02079 Csa-Chr7:20069950 Csa02g02662 Csa-Chr2:23201960 3.51E-43 dispersed
Csa01g02527 Csa-Chr1:22285116 Csa02g02662 Csa-Chr2:23201960 2.71E-67 transposed
Csa06g03403 Csa-Chr6:28184725 Csa02g02662 Csa-Chr2:23201960 7.74E-16 transposed
Csa02g02662 Csa-Chr2:23201960 Csa06g03499 Csa-Chr6:28626745 1.54E-101 wgd
Csa02g02662 Csa-Chr2:23201960 Csa07g00349 Csa-Chr7:2582930 5.82E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77934 PF00069 Pkinase 5.10E-59 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02662 K20716 - csv:101208274 865.914