Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02681 ATGGAGAGCTTATTTGTTCTTACATTGCTTAGTTCAATATGGGCATTTCTTACTGGTTCTGCATGCTGCCAAAGGCCTGCAGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAATTATAGGAAGAGCAGCAAAGGTGGCAATGGAAGCTGCAGTCTCGGATGTGAATGCAGATCCTTCTATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGTAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGATGTTGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTTCAAGTCCCTCTTATATCATACGCCGCCACTGACCCAACTTTATCTGCTCTCCAATTCCCCTTTTTCCTACGGACAACTCAGAGTGATGCCAATCAAATGACTGCTATGGCAGACTTAATTGACTTTTATGAGTGGAAAGAGGTGATCATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACCGATGAGCTTGACAAGAGGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCATTGTAATCTCAGTGAAATCACAGCCATACTCAATAAATCCAAGTTGCTTGGTCCTCGTGTTTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTGGATTCTATTCTGCTTGTGCAACAAACCTCTCTAAACATCCTTCAAGGCGTGGTTGTACTTCGTCAACATATTCCTGAATCCAGCCAAAAAGTAACATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGACTCCAGAAACTCTTCGTTGAATGTCTATGCTCTAAGTGCCTATGATACCATTCAAGTAGTTGCACATGCAATTGATAAGTTTCTGAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCCTGGGGAAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCAGATTGAGTTTAACACAGATCGGAACATTGTCACTAGAGGCTATGAGGTGATCAATATTGATCAGACGGGACTGCGTAGAGTTGGTTATTGGTCCAATGTCACAGGCTTTACAATCCAATCCCCAGAAACTCTAAAACGGAAACAAATTAGTTATTCACACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAAACCGCGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACATAGAGTAAGTTTTGTTGAATTTGTTACTGCAATCAATGGAAGCCACAAAAACATTGAAGGATACTGTATCGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCTTATGATGTTCCTTACAGATTAATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATGATGACCTTGTGAAGAACGTGGCAAATGGTATATTCGATGCAGCTGTTGGAGATATTGCAATTGTGACCAATCGCACACGGATTGTAGACTTTTCACAGCCTTTTGCTTCTACCGGTCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTGTTCCTTAAGCCATTTACAGTAGAGATGTGGTGCATAACATCAGCATCCTTTTTTATGATTGGGGCAGTCATATGGCTTCTTGAGCACCGAGTAAATGACGATTTCCGTGGTCCACCAAAGAGGCAGCTAATGACAGTAATACTGTTCAGCTTCTCAACATTGTTTAAAACGAACCAGGAAGCTACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTCATCACATCTAGCTATACAGCCAGTCTCACTTCAATCCTTACGGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGACGACTTGATTACTAATGAACAGCCAATTGGCTACCAGGTAGGATCGTTTGCGTATAGCTATCTGACCGAGAGTCTATACGTTCCACGATCGAGGCTTGTATCTCTAGGCTCTCCAGATGAGTATGAAGCAGCACTGCTGAAGGGACCGTTCAGAAAAGGAGGTGTGGCGGCTATTGTAGATGAACTTCCATATGTGGAATTATTCTTATCGGGAAGGAATGATTTCGGAATGATTGGACAGCCATTCACGAAGAGCGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCAGTAGACATGTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAGCTTCAGAAGATCCATGAGAAGTGGTTTTGTAGAATGGGTTGTCCTGCAGAGAGGAGAAGGAAATCTAAGCCTATACAACTTCAGTTGGTCAGCTTCTGGGGTCTTTATCTGTTGTGCGGCGCCTTTTCACTCATTGCTCTTTTTATATTTTTGCTGCGTATAGTTCGACAATTTGCTCGCTACATACGACAACAGAAGGAATCATCTCAAGCAGATTTGATGTCATCAAATTCAAACTCAAGCTGGACTCAGGTTATATATAAGTTTATCGACTTTGTTGATGAGAAGGAAGAAGCTATCAAGAGACTTTTTCGAAAGCATGATACTCTGAATCAGGCTAACCGATAG 2745 40.95 MESLFVLTLLSSIWAFLTGSACCQRPAVVNIGAVFTFDSIIGRAAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDANQMTAMADLIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSHCNLSEITAILNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSTTLDSILLVQQTSLNILQGVVVLRQHIPESSQKVTLWSRLRKMLPEDSRNSSLNVYALSAYDTIQVVAHAIDKFLNEGRSITFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGQIEFNTDRNIVTRGYEVINIDQTGLRRVGYWSNVTGFTIQSPETLKRKQISYSHLNQTLGNVTWPGGKTEKPRGWVIADNERPLIIGVPHRVSFVEFVTAINGSHKNIEGYCIDLFNEARKLVPYDVPYRLIPFGNGYSNPSYDDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCITSASFFMIGAVIWLLEHRVNDDFRGPPKRQLMTVILFSFSTLFKTNQEATVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITNEQPIGYQVGSFAYSYLTESLYVPRSRLVSLGSPDEYEAALLKGPFRKGGVAAIVDELPYVELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDMSTAILKLSENGKLQKIHEKWFCRMGCPAERRRKSKPIQLQLVSFWGLYLLCGAFSLIALFIFLLRIVRQFARYIRQQKESSQADLMSSNSNSSWTQVIYKFIDFVDEKEEAIKRLFRKHDTLNQANR* 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23361035 23366175 + CsaV3_2G035000.1 Csa02g02681 520738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02681 914 Gene3D - 144 418 - -
Csa02g02681 914 Pfam Receptor family ligand binding region 46 403 IPR001828 -
Csa02g02681 914 SUPERFAMILY Periplasmic binding protein-like II 441 808 - -
Csa02g02681 914 Pfam Bacterial extracellular solute-binding proteins, family 3 487 808 IPR001638 -
Csa02g02681 914 SUPERFAMILY Periplasmic binding protein-like I 22 457 IPR028082 -
Csa02g02681 914 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
Csa02g02681 914 PIRSF IGluLR_plant 1 914 IPR017103 -
Csa02g02681 914 Coils Coil 892 912 - -
Csa02g02681 914 CDD PBP1_GABAb_receptor_plant 30 420 IPR044440 -
Csa02g02681 914 Gene3D - 756 815 - -
Csa02g02681 914 Gene3D - 47 394 - -
Csa02g02681 914 CDD GluR_Plant 464 808 - -
Csa02g02681 914 SMART GluR_14 465 810 IPR001320 GO:0015276|GO:0016020
Csa02g02681 914 Gene3D - 578 711 - -
Csa02g02681 914 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 910 - -
Csa02g02681 914 PANTHER GLUTAMATE RECEPTOR 3.7 13 910 - -
Csa02g02681 914 Gene3D - 471 577 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02681 Csa-Chr2:23361035 Csa06g03402 Csa-Chr6:28181168 0 dispersed
Csa02g02681 Csa-Chr2:23361035 Csa02g02682 Csa-Chr2:23373288 2.61E-150 tandem
Csa02g02681 Csa-Chr2:23361035 Csa07g00367 Csa-Chr7:2736621 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02681 K05387 - csv:101215715 1795.02