Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02682 ATGAAGGTGTTTTGGATTAGGAGAAGTGGCCATTTCAAAACAAGAATGATGCTATTTGCATTGTTGTTTGGGATTTGGATGCCTTTGGGAGTCATTGGTGTCTCTGAAAACATTACTATTTCTTCTTCAAATCAAAGGGTGTTGAATGTTGGAGTTCTCTTCACTTTCGATTCCATTATTGGACGGTCTGCACAGCCTGCGATTTTAGCTGCTGTGGACGACGTTAATGCCGATAACGACATTCTTCCCAAAATGAAGCTGAACTTGATCCTACACGACACGAACTGCAGCGGGTTCTTTGGAACTATGGAAGGTGCATTGTCTAATTTCCACTTTGATTCTCTTTCTGTGGCTCTGGAGTTAGCTTCATTTACTTGCATTGCGAAGGTAACATTCGATTCTATGAGCATGTATCTAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGCTGCTATTGGGCCACAATCTTCAGGCATCGCTCACGTCATTTCTCATGTTATTAATGAACTCCATATTCCACTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAACAATACCAATATTTTGTTCGAACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCTGATATGGTTGCGAAGTTTGGATGGAAAGAGGTTGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCGGCATTGAGCGATGCCTTGGCGAAGAAGCGAGCCAAGATCGCTTATAAGGCTGCCTTCCCTTCTGGATCCTCCATTAGCACAATAAGTGACTTGTTGGTTTCCGTAAACATGATGGAATCTCGGGTTTACATTGTACACGTCAATCCCGACACAGGTTTATCAGTATTTTCAGTAGCTAAGAAACTTCAAATGATGGGTAGTGGTTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCGTTTGAAACAAATAGTCCTGATGTAATGAATCAGCTACAAGGTGTAGTTGCTCTTCGTCACCACACTCCCGATGGCAATCTGAAGAAAAACTTTATCTCTAAGTGGAGGAATCTAAAATACAAAAAGAGTCCAAACTTCAACTCTTATGCACTCTATGCATATGACTCTGTTTGGTTAATAGCCCGTGCTCTCGACACGTTTTTTAAAGAAGGTGGAAATATATCATTTTCCAACGACCCAAAATTGCGTGAAAACAATGGTAGCATGTTTTACTATAAATCATTCAAAGTGTTTAACGGTGGCGAACAACTTCTACAAACAATTAAGAGAACCAACTTCACAGGGTTAAGTGGTCAAATTCAATTTGGTGATGGTAAACATTTGATTCATCCAGCTTATGATATCTTGAACATTGGGGGAACTGGTGTACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATAGCACCTGAAAACTTGTATGTCAAGCCACTTAATGCTTCCCCAAATAACAATCTCTATAGTGTCATATGGCCGGGTGAAACAACGACCATTCCTCGAGGATGGGTATTTCCACACAGTGGAAAACCATTACAAATTGTTGTACCCAACCGAGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAACCATCCAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAAGACACTCCTGAGTATAGCAATCTTGTATATGAGGTTTCACAGAATGTGAGTACACGACTTTCATTCTAG 1779 40.19 MKVFWIRRSGHFKTRMMLFALLFGIWMPLGVIGVSENITISSSNQRVLNVGVLFTFDSIIGRSAQPAILAAVDDVNADNDILPKMKLNLILHDTNCSGFFGTMEGALSNFHFDSLSVALELASFTCIAKVTFDSMSMYLALQLMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVAKFGWKEVVAIFVDDDNGRSGISALSDALAKKRAKIAYKAAFPSGSSISTISDLLVSVNMMESRVYIVHVNPDTGLSVFSVAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDGNLKKNFISKWRNLKYKKSPNFNSYALYAYDSVWLIARALDTFFKEGGNISFSNDPKLRENNGSMFYYKSFKVFNGGEQLLQTIKRTNFTGLSGQIQFGDGKHLIHPAYDILNIGGTGVRRIGYWSNYSGLSTIAPENLYVKPLNASPNNNLYSVIWPGETTTIPRGWVFPHSGKPLQIVVPNRVSYKAFVSKDKNHPGVKGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYSNLVYEVSQNVSTRLSF* 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23373288 23375693 + CsaV3_2G035010.1 Csa02g02682 520739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02682 592 Gene3D - 139 446 - -
Csa02g02682 592 PANTHER GLUTAMATE RECEPTOR 3.4 135 585 - -
Csa02g02682 592 PANTHER GLUTAMATE RECEPTOR 3.4 32 107 - -
Csa02g02682 592 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 107 - -
Csa02g02682 592 Gene3D - 198 471 - -
Csa02g02682 592 SUPERFAMILY Periplasmic binding protein-like I 43 509 IPR028082 -
Csa02g02682 592 Pfam Receptor family ligand binding region 65 455 IPR001828 -
Csa02g02682 592 CDD PBP1_GABAb_receptor_plant 49 472 IPR044440 -
Csa02g02682 592 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 135 585 - -
Csa02g02682 592 PRINTS Metabotropic glutamate GPCR signature 218 235 IPR000337 GO:0004930|GO:0007186|GO:0016021
Csa02g02682 592 PRINTS Metabotropic glutamate GPCR signature 202 218 IPR000337 GO:0004930|GO:0007186|GO:0016021
Csa02g02682 592 PRINTS Metabotropic glutamate GPCR signature 61 76 IPR000337 GO:0004930|GO:0007186|GO:0016021
Csa02g02682 592 PRINTS Metabotropic glutamate GPCR signature 183 202 IPR000337 GO:0004930|GO:0007186|GO:0016021
Csa02g02682 592 PRINTS Metabotropic glutamate GPCR signature 151 177 IPR000337 GO:0004930|GO:0007186|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02682 Csa-Chr2:23373288 Csa02g02684 Csa-Chr2:23395424 0 dispersed
Csa02g02681 Csa-Chr2:23361035 Csa02g02682 Csa-Chr2:23373288 2.61E-150 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02682 K05387 - csv:101207545 1083.17