Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02682 | ATGAAGGTGTTTTGGATTAGGAGAAGTGGCCATTTCAAAACAAGAATGATGCTATTTGCATTGTTGTTTGGGATTTGGATGCCTTTGGGAGTCATTGGTGTCTCTGAAAACATTACTATTTCTTCTTCAAATCAAAGGGTGTTGAATGTTGGAGTTCTCTTCACTTTCGATTCCATTATTGGACGGTCTGCACAGCCTGCGATTTTAGCTGCTGTGGACGACGTTAATGCCGATAACGACATTCTTCCCAAAATGAAGCTGAACTTGATCCTACACGACACGAACTGCAGCGGGTTCTTTGGAACTATGGAAGGTGCATTGTCTAATTTCCACTTTGATTCTCTTTCTGTGGCTCTGGAGTTAGCTTCATTTACTTGCATTGCGAAGGTAACATTCGATTCTATGAGCATGTATCTAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGCTGCTATTGGGCCACAATCTTCAGGCATCGCTCACGTCATTTCTCATGTTATTAATGAACTCCATATTCCACTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCACAACAATACCAATATTTTGTTCGAACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCTGATATGGTTGCGAAGTTTGGATGGAAAGAGGTTGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCGGCATTGAGCGATGCCTTGGCGAAGAAGCGAGCCAAGATCGCTTATAAGGCTGCCTTCCCTTCTGGATCCTCCATTAGCACAATAAGTGACTTGTTGGTTTCCGTAAACATGATGGAATCTCGGGTTTACATTGTACACGTCAATCCCGACACAGGTTTATCAGTATTTTCAGTAGCTAAGAAACTTCAAATGATGGGTAGTGGTTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCGTTTGAAACAAATAGTCCTGATGTAATGAATCAGCTACAAGGTGTAGTTGCTCTTCGTCACCACACTCCCGATGGCAATCTGAAGAAAAACTTTATCTCTAAGTGGAGGAATCTAAAATACAAAAAGAGTCCAAACTTCAACTCTTATGCACTCTATGCATATGACTCTGTTTGGTTAATAGCCCGTGCTCTCGACACGTTTTTTAAAGAAGGTGGAAATATATCATTTTCCAACGACCCAAAATTGCGTGAAAACAATGGTAGCATGTTTTACTATAAATCATTCAAAGTGTTTAACGGTGGCGAACAACTTCTACAAACAATTAAGAGAACCAACTTCACAGGGTTAAGTGGTCAAATTCAATTTGGTGATGGTAAACATTTGATTCATCCAGCTTATGATATCTTGAACATTGGGGGAACTGGTGTACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATAGCACCTGAAAACTTGTATGTCAAGCCACTTAATGCTTCCCCAAATAACAATCTCTATAGTGTCATATGGCCGGGTGAAACAACGACCATTCCTCGAGGATGGGTATTTCCACACAGTGGAAAACCATTACAAATTGTTGTACCCAACCGAGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAACCATCCAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAAGACACTCCTGAGTATAGCAATCTTGTATATGAGGTTTCACAGAATGTGAGTACACGACTTTCATTCTAG | 1779 | 40.19 | MKVFWIRRSGHFKTRMMLFALLFGIWMPLGVIGVSENITISSSNQRVLNVGVLFTFDSIIGRSAQPAILAAVDDVNADNDILPKMKLNLILHDTNCSGFFGTMEGALSNFHFDSLSVALELASFTCIAKVTFDSMSMYLALQLMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVAKFGWKEVVAIFVDDDNGRSGISALSDALAKKRAKIAYKAAFPSGSSISTISDLLVSVNMMESRVYIVHVNPDTGLSVFSVAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDGNLKKNFISKWRNLKYKKSPNFNSYALYAYDSVWLIARALDTFFKEGGNISFSNDPKLRENNGSMFYYKSFKVFNGGEQLLQTIKRTNFTGLSGQIQFGDGKHLIHPAYDILNIGGTGVRRIGYWSNYSGLSTIAPENLYVKPLNASPNNNLYSVIWPGETTTIPRGWVFPHSGKPLQIVVPNRVSYKAFVSKDKNHPGVKGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYSNLVYEVSQNVSTRLSF* | 593 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23373288 | 23375693 | + | CsaV3_2G035010.1 | Csa02g02682 | 520739 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02682 | 592 | Gene3D | - | 139 | 446 | - | - | |
Csa02g02682 | 592 | PANTHER | GLUTAMATE RECEPTOR 3.4 | 135 | 585 | - | - | |
Csa02g02682 | 592 | PANTHER | GLUTAMATE RECEPTOR 3.4 | 32 | 107 | - | - | |
Csa02g02682 | 592 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 32 | 107 | - | - | |
Csa02g02682 | 592 | Gene3D | - | 198 | 471 | - | - | |
Csa02g02682 | 592 | SUPERFAMILY | Periplasmic binding protein-like I | 43 | 509 | IPR028082 | - | |
Csa02g02682 | 592 | Pfam | Receptor family ligand binding region | 65 | 455 | IPR001828 | - | |
Csa02g02682 | 592 | CDD | PBP1_GABAb_receptor_plant | 49 | 472 | IPR044440 | - | |
Csa02g02682 | 592 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 135 | 585 | - | - | |
Csa02g02682 | 592 | PRINTS | Metabotropic glutamate GPCR signature | 218 | 235 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Csa02g02682 | 592 | PRINTS | Metabotropic glutamate GPCR signature | 202 | 218 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Csa02g02682 | 592 | PRINTS | Metabotropic glutamate GPCR signature | 61 | 76 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Csa02g02682 | 592 | PRINTS | Metabotropic glutamate GPCR signature | 183 | 202 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Csa02g02682 | 592 | PRINTS | Metabotropic glutamate GPCR signature | 151 | 177 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02682 | Csa-Chr2:23373288 | Csa02g02684 | Csa-Chr2:23395424 | 0 | dispersed | |
Csa02g02681 | Csa-Chr2:23361035 | Csa02g02682 | Csa-Chr2:23373288 | 2.61E-150 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02682 | K05387 | - | csv:101207545 | 1083.17 |