Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02683 ATGGGTCACGTTGTCTCTAATGTGAATAATGCTTATATTGATGATATATTCTCCCATCTTCAGAAATATGATGCAGTTGTTGGAGATATTACGATTGTAACGAATAGAACGAAGATTGTAGACTTCACTCAACCGTTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAATGAGGAGAAGTCAAGTCCATGGGCCTTTCTCAGGCCGTTTACCATTCAAATGTGGGCTGTCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCATCGGACTAATGAAGAGTTTCGTGGTCCACCAAGGCAACAACTAATTACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCACAAGGAAAACACTGTAAGCACCCTCGGACGGTTGGTACTGATAATATGGCTCTTTGTCGTGTTAATTATCAACTCAAGCTACACTGCTAGTTTGACGTCGATCTTAACAGTTCAACAACTAACGTCAAAGATTAAAGGGATCGATAGCTTAATCTCTAGAACCGATGTCATTGGAGTTCAAGAAGGGTCATTTGCATTGCATTACTTGATTGATGACCTAGGTGTAGCAGCATCTAGAATCATTAAACTAAAAGATCAGGAGGAATATGCGGACGCTCTTCGGCGTGGACCCGAAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTACGTTGAGCTTTTTCTGGCTGGAACCAATTGCATGTACAGGATAGTTGGAGAGGAGTTCACGAAAAGCGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTCGCAGTTGATTTATCTACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTCCAAAAGATCCATGATAAATGGCTATCACGAACTGAATGTTCGACGGACCTGAACCAAGTTGATGTAAACCAGCTATCACTAAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTGCCTGTTTTATAGCTCTTTCGGTATTCTTCTTTCGAGTACTATTTCAATACCGAAGATTTACCCCAGAAACCCAGTCTGATGTGGAGGATATTGAACCTGTTAGGACGAGACGTCTTAGCCGTACAACTAGCTTCATGAACTTTGTAGATAAAAAAGAAGCAGAAGTTAAACCCAAACTTAAAAGAAGCAGTGATAACAAACAAGTTAGCCAGAGCTCAGAGAGCCTTCCTGCTTCACCTCCTTGA 1221 41.69 MGHVVSNVNNAYIDDIFSHLQKYDAVVGDITIVTNRTKIVDFTQPFMESGLVVVTVVNEEKSSPWAFLRPFTIQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIKGIDSLISRTDVIGVQEGSFALHYLIDDLGVAASRIIKLKDQEEYADALRRGPENGGVAAIVDELPYVELFLAGTNCMYRIVGEEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSTDLNQVDVNQLSLSSFWGLFLICGIACFIALSVFFFRVLFQYRRFTPETQSDVEDIEPVRTRRLSRTTSFMNFVDKKEAEVKPKLKRSSDNKQVSQSSESLPASPP* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23375718 23377492 + CsaV3_2G035020.1 Csa02g02683 520740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02683 406 PANTHER GLUTAMATE RECEPTOR 3.4 21 388 - -
Csa02g02683 406 MobiDBLite consensus disorder prediction 390 406 - -
Csa02g02683 406 SMART GluR_14 1 296 IPR001320 GO:0015276|GO:0016020
Csa02g02683 406 Gene3D - 192 298 - -
Csa02g02683 406 MobiDBLite consensus disorder prediction 381 406 - -
Csa02g02683 406 Gene3D - 2 62 - -
Csa02g02683 406 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 388 - -
Csa02g02683 406 SUPERFAMILY Periplasmic binding protein-like II 21 295 - -
Csa02g02683 406 Pfam Ligand-gated ion channel 296 327 IPR001320 GO:0015276|GO:0016020
Csa02g02683 406 Gene3D - 63 191 - -
Csa02g02683 406 Pfam Bacterial extracellular solute-binding proteins, family 3 21 295 IPR001638 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02683 Csa-Chr2:23375718 Csa06g03402 Csa-Chr6:28181168 1.49E-160 dispersed
Csa02g02683 Csa-Chr2:23375718 Csa02g02684 Csa-Chr2:23395424 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02683 K05387 - csv:101207545 755.747