Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g02684 | ATGAAGGTGTTTTGGATTAGGAGTGGCCATTTGGTCAAAACAAGAGTTATGCTATTTGCATTGTTGTTTGGGATTTGGATGCCTTTGGGAGTCATTGGTGTCTCTAAAAACATTACCACTTCTTCAAATCCGAGGGTGTTGAATGTTGGAGTTCTCTTCACTTTCGATTCCGTAATTGGAAGGTCTGCACAGCCAGCGATTTTAGCTGCCATGGACGACATCAATGCCGATAACAACACTCTTCAAGGAACAAAGCTAAGGCTGATCCTCCATGACACGAACTGCAGCGGATTTCTTGGAACTGTGGAAGCCTTGCAGTTGATGCAGGATGAAGTGGTTGCTGCTATTGGGCCACAATCTTCGGGCATCGCTCACGTCATTTCCCATGTTATTAATGAACTCCATATACCACTTTTATCATTTGGAGCTACTGATCCTGCTTTATCTGCACACGAATACCAATATTTCGTCCGAACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCCGATATAGTAGATTATTTTGGATGGAGAGAGGTTGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCAGCATTGAGCGATGCCTTGGCGAAGAAGCGAGCCAAAATCTCATATAGGGCTGCTTTTCCTCCTGGATCCCCCAGTAGCGCAATAAGTGACTTGTTGGTTTCGATCAACCTGATGGAATCTCGAGTTTATATTGTACACGTCAACCCTGACACTGGTTTATCAGTATTTTCAATGGCTAAGAAACTTCAGATGTTAGGTAGTGGCTATGTTTGGATCACAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATGTAATGAATCAGCTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCTGATGGCAATCTGAAGAAAAACTTTATCTCCAAGTGGAAGAATCTAAAATTAAAAAAGAGTCCAAACTTCAACTCTTATGCACTTTATGCATACGACTCTGTTTGGTTAGCAGCTCGTGCTCTCGACACATTCATTAAAGAAGGTGGAAATATATCCTTTTCCAACGACCCGAAGTTAAGTGAAAATAATGGAAGCATGTTGCACTTAAAATCCCTCCGTGTGTTTAATGGCGGTGAACAACTTTTACAAACAATTAAGAGAACGAACTTCACAGGTGTAAGTGGGCGAATTCAATTTGGTGATGATAGAAATTTGATTAATCCAACTTATGATATCCTCAACATTGGGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAAAACTTGTATACCAAGCCTCTTAATGCTTCCCCAAATAACCATCTCTATAGTGTCATATGGCCCGGTGAAATAACGACCGTTCCTCGAGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCTTTTGTGGCTAAAGATAACAACCCTCTAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATTAACTTGTTGTCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCCGAGTATAGCGATCTCGTATATGAAGTTTCACAAAATAAATATGATGCAGCTGTTGGAGATATTACTATTGTAACAAATAGGACGAAGATTGTAGACTTCACACAACCATTTATGGAGTCAGGACTTGTTGTTGTCACTGTCGTCAAAGGGGAGAAGTCTAGCCCATGGGCTTTTCTTAGGCCATTTACTATTCAAATGTGGGCTGTCACTGCTTTATTCTTTATTTTTGTTGGAGCCGTCGTCTGGATTCTTGAGCATCGGACTAATGAAGAGTTTCGTGGTCCACCGAGGCAACAACTAATTACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCATAAGGAAAACACTGTAAGCACCCTCGGAAGGTTGGTGCTGATAATATGGCTTTTTGTTGTGTTAATTATCAACTCGAGCTACACGGCTAGTTTGACGTCGATTTTAACGGTGCAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCGATTGGAGTTCAGGAAGGGTCATTTGCATTGAATTATTTGATTGATGAACTGAATATAGTAGCATCTAGGATCATTAAACTAAAAAATCAGGATGAGTATGATGATGCTCTTCGGCGTGGACCAGGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAACTTTTTTTGTCTGGTACCAATTGCGTATTCAAGACAGTTGGACAAGAGTTTACGAAAAGCGGATGGGGATTTGCATTTCAAAGGGACTCTCCTCTTGCAGTTGATTTATCAACGGCCATTCTTCAACTCTCGGAGAATGGTGATCTTCAAAAGATCCATGACAAATGGCTCTCACGAACTGAGTGCTCCCTGGGTTTGAACCAAGCCGACTTAAACCAACTATCATTGAGTAGCTTTTGGGGATTGTTCTTAATTTGTGGCATTTCCTGCTTTATCGCTCTTTCGATATTCTTCTTTCGAGTACTATTCCAATATCGAAGATTTACCCCGGAAACTCAGTCTGAAGTCGAGCAAATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACCAGCTTCATGCTTTTTGTAGATAAAAAAGAAGCAGAAGTTAAAGACAAGCTTAAAAGAAAATCAAATGATAACAAACAAGCTAGCCAAAGTACAGAGGGCCACTCTGATTCACCTCCATGA | 2808 | 40.85 | MKVFWIRSGHLVKTRVMLFALLFGIWMPLGVIGVSKNITTSSNPRVLNVGVLFTFDSVIGRSAQPAILAAMDDINADNNTLQGTKLRLILHDTNCSGFLGTVEALQLMQDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAHEYQYFVRTTQSDYFQMNAIADIVDYFGWREVVAIFVDDDNGRSGISALSDALAKKRAKISYRAAFPPGSPSSAISDLLVSINLMESRVYIVHVNPDTGLSVFSMAKKLQMLGSGYVWITTDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDGNLKKNFISKWKNLKLKKSPNFNSYALYAYDSVWLAARALDTFIKEGGNISFSNDPKLSENNGSMLHLKSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLINPTYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKPLNASPNNHLYSVIWPGEITTVPRGWVFPHNGKPLQIVVPNRVSYKAFVAKDNNPLGVKGYCIDVFEAAINLLSYPVPHTYILYGDGKDTPEYSDLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKGEKSSPWAFLRPFTIQMWAVTALFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIVASRIIKLKNQDEYDDALRRGPGNGGVAAIVDELPYVELFLSGTNCVFKTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSLGLNQADLNQLSLSSFWGLFLICGISCFIALSIFFFRVLFQYRRFTPETQSEVEQIEPVRTRRLSRTTSFMLFVDKKEAEVKDKLKRKSNDNKQASQSTEGHSDSPP* | 936 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23395424 | 23401970 | + | CsaV3_2G035030.1 | Csa02g02684 | 520741 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g02684 | 935 | SUPERFAMILY | Periplasmic binding protein-like II | 457 | 823 | - | - | |
Csa02g02684 | 935 | Gene3D | - | 66 | 410 | - | - | |
Csa02g02684 | 935 | Pfam | Ligand-gated ion channel | 824 | 854 | IPR001320 | GO:0015276|GO:0016020 | |
Csa02g02684 | 935 | CDD | PBP1_GABAb_receptor_plant | 48 | 436 | IPR044440 | - | |
Csa02g02684 | 935 | SUPERFAMILY | Periplasmic binding protein-like I | 41 | 473 | IPR028082 | - | |
Csa02g02684 | 935 | Gene3D | - | 591 | 719 | - | - | |
Csa02g02684 | 935 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 38 | 916 | - | - | |
Csa02g02684 | 935 | SMART | GluR_14 | 482 | 824 | IPR001320 | GO:0015276|GO:0016020 | |
Csa02g02684 | 935 | Gene3D | - | 720 | 826 | - | - | |
Csa02g02684 | 935 | Gene3D | - | 162 | 435 | - | - | |
Csa02g02684 | 935 | MobiDBLite | consensus disorder prediction | 911 | 935 | - | - | |
Csa02g02684 | 935 | PIRSF | IGluLR_plant | 13 | 934 | IPR017103 | - | |
Csa02g02684 | 935 | Gene3D | - | 475 | 590 | - | - | |
Csa02g02684 | 935 | Pfam | Receptor family ligand binding region | 64 | 419 | IPR001828 | - | |
Csa02g02684 | 935 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 60 | 76 | - | - | |
Csa02g02684 | 935 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 120 | 148 | - | - | |
Csa02g02684 | 935 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 251 | 274 | - | - | |
Csa02g02684 | 935 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 494 | 823 | IPR001638 | - | |
Csa02g02684 | 935 | PANTHER | GLUTAMATE RECEPTOR 3.4 | 38 | 916 | - | - | |
Csa02g02684 | 935 | CDD | GluR_Plant | 479 | 822 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02682 | Csa-Chr2:23373288 | Csa02g02684 | Csa-Chr2:23395424 | 0 | dispersed | |
Csa02g02684 | Csa-Chr2:23395424 | Csa06g03402 | Csa-Chr6:28181168 | 0 | dispersed | |
Csa02g02683 | Csa-Chr2:23375718 | Csa02g02684 | Csa-Chr2:23395424 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g02684 | K05387 | - | csv:101215485 | 1862.43 |