Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02684 ATGAAGGTGTTTTGGATTAGGAGTGGCCATTTGGTCAAAACAAGAGTTATGCTATTTGCATTGTTGTTTGGGATTTGGATGCCTTTGGGAGTCATTGGTGTCTCTAAAAACATTACCACTTCTTCAAATCCGAGGGTGTTGAATGTTGGAGTTCTCTTCACTTTCGATTCCGTAATTGGAAGGTCTGCACAGCCAGCGATTTTAGCTGCCATGGACGACATCAATGCCGATAACAACACTCTTCAAGGAACAAAGCTAAGGCTGATCCTCCATGACACGAACTGCAGCGGATTTCTTGGAACTGTGGAAGCCTTGCAGTTGATGCAGGATGAAGTGGTTGCTGCTATTGGGCCACAATCTTCGGGCATCGCTCACGTCATTTCCCATGTTATTAATGAACTCCATATACCACTTTTATCATTTGGAGCTACTGATCCTGCTTTATCTGCACACGAATACCAATATTTCGTCCGAACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCCGATATAGTAGATTATTTTGGATGGAGAGAGGTTGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCAGCATTGAGCGATGCCTTGGCGAAGAAGCGAGCCAAAATCTCATATAGGGCTGCTTTTCCTCCTGGATCCCCCAGTAGCGCAATAAGTGACTTGTTGGTTTCGATCAACCTGATGGAATCTCGAGTTTATATTGTACACGTCAACCCTGACACTGGTTTATCAGTATTTTCAATGGCTAAGAAACTTCAGATGTTAGGTAGTGGCTATGTTTGGATCACAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATGTAATGAATCAGCTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCTGATGGCAATCTGAAGAAAAACTTTATCTCCAAGTGGAAGAATCTAAAATTAAAAAAGAGTCCAAACTTCAACTCTTATGCACTTTATGCATACGACTCTGTTTGGTTAGCAGCTCGTGCTCTCGACACATTCATTAAAGAAGGTGGAAATATATCCTTTTCCAACGACCCGAAGTTAAGTGAAAATAATGGAAGCATGTTGCACTTAAAATCCCTCCGTGTGTTTAATGGCGGTGAACAACTTTTACAAACAATTAAGAGAACGAACTTCACAGGTGTAAGTGGGCGAATTCAATTTGGTGATGATAGAAATTTGATTAATCCAACTTATGATATCCTCAACATTGGGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAAAACTTGTATACCAAGCCTCTTAATGCTTCCCCAAATAACCATCTCTATAGTGTCATATGGCCCGGTGAAATAACGACCGTTCCTCGAGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCTTTTGTGGCTAAAGATAACAACCCTCTAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATTAACTTGTTGTCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCCGAGTATAGCGATCTCGTATATGAAGTTTCACAAAATAAATATGATGCAGCTGTTGGAGATATTACTATTGTAACAAATAGGACGAAGATTGTAGACTTCACACAACCATTTATGGAGTCAGGACTTGTTGTTGTCACTGTCGTCAAAGGGGAGAAGTCTAGCCCATGGGCTTTTCTTAGGCCATTTACTATTCAAATGTGGGCTGTCACTGCTTTATTCTTTATTTTTGTTGGAGCCGTCGTCTGGATTCTTGAGCATCGGACTAATGAAGAGTTTCGTGGTCCACCGAGGCAACAACTAATTACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCATAAGGAAAACACTGTAAGCACCCTCGGAAGGTTGGTGCTGATAATATGGCTTTTTGTTGTGTTAATTATCAACTCGAGCTACACGGCTAGTTTGACGTCGATTTTAACGGTGCAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCGATTGGAGTTCAGGAAGGGTCATTTGCATTGAATTATTTGATTGATGAACTGAATATAGTAGCATCTAGGATCATTAAACTAAAAAATCAGGATGAGTATGATGATGCTCTTCGGCGTGGACCAGGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAACTTTTTTTGTCTGGTACCAATTGCGTATTCAAGACAGTTGGACAAGAGTTTACGAAAAGCGGATGGGGATTTGCATTTCAAAGGGACTCTCCTCTTGCAGTTGATTTATCAACGGCCATTCTTCAACTCTCGGAGAATGGTGATCTTCAAAAGATCCATGACAAATGGCTCTCACGAACTGAGTGCTCCCTGGGTTTGAACCAAGCCGACTTAAACCAACTATCATTGAGTAGCTTTTGGGGATTGTTCTTAATTTGTGGCATTTCCTGCTTTATCGCTCTTTCGATATTCTTCTTTCGAGTACTATTCCAATATCGAAGATTTACCCCGGAAACTCAGTCTGAAGTCGAGCAAATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACCAGCTTCATGCTTTTTGTAGATAAAAAAGAAGCAGAAGTTAAAGACAAGCTTAAAAGAAAATCAAATGATAACAAACAAGCTAGCCAAAGTACAGAGGGCCACTCTGATTCACCTCCATGA 2808 40.85 MKVFWIRSGHLVKTRVMLFALLFGIWMPLGVIGVSKNITTSSNPRVLNVGVLFTFDSVIGRSAQPAILAAMDDINADNNTLQGTKLRLILHDTNCSGFLGTVEALQLMQDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAHEYQYFVRTTQSDYFQMNAIADIVDYFGWREVVAIFVDDDNGRSGISALSDALAKKRAKISYRAAFPPGSPSSAISDLLVSINLMESRVYIVHVNPDTGLSVFSMAKKLQMLGSGYVWITTDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDGNLKKNFISKWKNLKLKKSPNFNSYALYAYDSVWLAARALDTFIKEGGNISFSNDPKLSENNGSMLHLKSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLINPTYDILNIGGTGSRRIGYWSNYSGLSTIAPENLYTKPLNASPNNHLYSVIWPGEITTVPRGWVFPHNGKPLQIVVPNRVSYKAFVAKDNNPLGVKGYCIDVFEAAINLLSYPVPHTYILYGDGKDTPEYSDLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKGEKSSPWAFLRPFTIQMWAVTALFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIVASRIIKLKNQDEYDDALRRGPGNGGVAAIVDELPYVELFLSGTNCVFKTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSLGLNQADLNQLSLSSFWGLFLICGISCFIALSIFFFRVLFQYRRFTPETQSEVEQIEPVRTRRLSRTTSFMLFVDKKEAEVKDKLKRKSNDNKQASQSTEGHSDSPP* 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23395424 23401970 + CsaV3_2G035030.1 Csa02g02684 520741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02684 935 SUPERFAMILY Periplasmic binding protein-like II 457 823 - -
Csa02g02684 935 Gene3D - 66 410 - -
Csa02g02684 935 Pfam Ligand-gated ion channel 824 854 IPR001320 GO:0015276|GO:0016020
Csa02g02684 935 CDD PBP1_GABAb_receptor_plant 48 436 IPR044440 -
Csa02g02684 935 SUPERFAMILY Periplasmic binding protein-like I 41 473 IPR028082 -
Csa02g02684 935 Gene3D - 591 719 - -
Csa02g02684 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 916 - -
Csa02g02684 935 SMART GluR_14 482 824 IPR001320 GO:0015276|GO:0016020
Csa02g02684 935 Gene3D - 720 826 - -
Csa02g02684 935 Gene3D - 162 435 - -
Csa02g02684 935 MobiDBLite consensus disorder prediction 911 935 - -
Csa02g02684 935 PIRSF IGluLR_plant 13 934 IPR017103 -
Csa02g02684 935 Gene3D - 475 590 - -
Csa02g02684 935 Pfam Receptor family ligand binding region 64 419 IPR001828 -
Csa02g02684 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 60 76 - -
Csa02g02684 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 120 148 - -
Csa02g02684 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 251 274 - -
Csa02g02684 935 Pfam Bacterial extracellular solute-binding proteins, family 3 494 823 IPR001638 -
Csa02g02684 935 PANTHER GLUTAMATE RECEPTOR 3.4 38 916 - -
Csa02g02684 935 CDD GluR_Plant 479 822 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02682 Csa-Chr2:23373288 Csa02g02684 Csa-Chr2:23395424 0 dispersed
Csa02g02684 Csa-Chr2:23395424 Csa06g03402 Csa-Chr6:28181168 0 dispersed
Csa02g02683 Csa-Chr2:23375718 Csa02g02684 Csa-Chr2:23395424 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02684 K05387 - csv:101215485 1862.43