Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02688 ATGCCCGCCGGAATTATGACACCGGCGAGAAACATGGGGTCGATGATTGGAAGAAATGGGAATAATGATGTTGCTGGATTTTCCTCTCCTTCTGGACTTCCTTTTTCTCAGCCAAGCATTATGGATGCTCACCTTCTCCCTCTAGACATCCCTCAAAACACTTCGGAAAGCGATCTTGCTCGAATCAGAGATGACGACTTCGACAGTGCTACTAAATCCGGCAGCGATAACAACCATGAGCTCGTGTCCGGTGATGACCAAGATCCTCGTCCTAAAAAGAAGCGTTACCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGCGTTCTTCAAAGAGTGTCCTCACCCTGACGACAAACAAAGAAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCTTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGAGGCATGAGAATACTCAACTTCGAACAGAAAATGAGAAGCTTAGAGCTGATAACATGAGATATAGAGAAGCCCTAAGCAATGCTTCATGCCCTAATTGTGGTGGCCCTACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAATGCCCGTCTCCGCGAAGAGATCGATCGCATATCAGCAATAGCTGCAAAATACGTAGGGAAGCCAGTGGTGAACTACCCTCTACTTTCTCCATCAGTCCCATCTCGTCCACTAGAGTTAGGAATGGCCAACTTCGGACCACAACCCGGCCTGGGAGGAGGAGACATCTATGGCTCCGCCAGCGACCTAATCCGATCCATCAGTGCCCCAACGGAGGCCGATAAACCAATGATCATTGAGCTAGCCGTTGCAGCCATGGAAGAACTAACTAGAATGGCTCAAATGGGTGAGCCATTGTGGATGACTACACTGGATGGCTCCACCCATATGCTCAATGAAGATGAGTACTTAAGAACGTTTCCAAGAGGCATTGGTCCTAAGCCTTCTGGGTTTAAATGTGAAGCCTCTCGTGAATCGGCTGTTGTCATCATGAACCACATTAACCTAGTCGAGATTCTCATGGACGTGAATCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTTCTATCAACTGGTGTTGCTGGAAATTACAATGGTGCTTTGCAAGTGATGACGTCGGAATTTCAAGTTCCATCGCCACTAGTTCCGACTCGCGAAAGTTACTACGTTAGATATTGTAAGCAGCATGGAGACGGGACGTGGGTGGTGGTGGATGTTTCGTTGGATGATTTACGCCCTACACCTGGTGTTCGATGTAGACGAAGACCTTCCGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGAGTTCATAATCTTTACAAGCAACTAGTGAGCTCTGGCCAAGCTTTTGGGGCTAAACGCTGGGTTACAACTTTAGACCGCCAATGTGAACGACTCGCCAGTGCCATGGCCACTAACATTCCTACTGGTGATGTTGGAGTGATAACGAATCAAGAAGGGAGAAAGAGTATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACTACTTTGTCGGGTACTGGTGCGGACGATGTTCGAGTCATGACTAGAAAGAGCATCGACGACCCGGGAAGACCTCATGGTATTGTCCTTAGTGCGGCAACTTCCTTCTGGCTTCCTGTTCCACCCAAGAGAATCTTCGATTTTCTTCGAGATGAAAACTCTCGCAGTGAGTGGGACATTCTTTCCAACGGCGGAGTAGTTCAAGAAATGGCTCACATTGCCAACGGCCGCGACACTGGCAACTGCGTTTCTCTCCTACGAGTAAACAGCGCAAATTCAAGCCAAAGCAACATGCTAATCTTGCAAGAAAGCTGCACAGACCCAACAGCCTCATTCGTGATCTACGCACCAGTGGACGTAGTAGCAATGAACCTCGTCCTAAATGGTGGCGATCCCGACTATGTAGCACTACTCCCCTCAGGGTTTGCCATTCTTCCGGATGGCGGAGGCGGAGAGGGTGTTTCGGGAGGGTCGTTGTTGACAGTTGCATTTCAAATACTGGTGGATTCAGTGCCAACCGCAAAACTGTCACTTGGGTCAGTTGCAACGGTAAACAATCTGATAGCTTGTACGGTGGAAAGGATAAAAGCTTCATTATCATGTGAGAATGCATAA 2274 47.1 MPAGIMTPARNMGSMIGRNGNNDVAGFSSPSGLPFSQPSIMDAHLLPLDIPQNTSESDLARIRDDDFDSATKSGSDNNHELVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPSVPSRPLELGMANFGPQPGLGGGDIYGSASDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTTLDGSTHMLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHGDGTWVVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPHGIVLSAATSFWLPVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDVVAMNLVLNGGDPDYVALLPSGFAILPDGGGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENA* 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23428044 23434112 - CsaV3_2G035070.1 Csa02g02688 520745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02688 757 CDD START_ArGLABRA2_like 279 503 - -
Csa02g02688 757 Pfam START domain 285 504 IPR002913 GO:0008289
Csa02g02688 757 Gene3D - 334 503 IPR023393 -
Csa02g02688 757 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 48 754 - -
Csa02g02688 757 SUPERFAMILY Bet v1-like 275 506 - -
Csa02g02688 757 ProSiteProfiles START domain profile. 275 507 IPR002913 GO:0008289
Csa02g02688 757 Pfam Homeodomain 93 149 IPR001356 GO:0003677
Csa02g02688 757 SMART START_1 284 504 IPR002913 GO:0008289
Csa02g02688 757 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Csa02g02688 757 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Csa02g02688 757 MobiDBLite consensus disorder prediction 66 101 - -
Csa02g02688 757 SMART HOX_1 91 154 IPR001356 GO:0003677
Csa02g02688 757 CDD homeodomain 93 151 IPR001356 GO:0003677
Csa02g02688 757 MobiDBLite consensus disorder prediction 66 92 - -
Csa02g02688 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 48 754 IPR042160 -
Csa02g02688 757 Gene3D - 80 167 - -
Csa02g02688 757 Coils Coil 144 176 - -
Csa02g02688 757 SUPERFAMILY Homeodomain-like 80 150 IPR009057 -
Csa02g02688 757 SUPERFAMILY Bet v1-like 523 749 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01099 Csa-Chr1:6814980 Csa02g02688 Csa-Chr2:23428044 0 dispersed
Csa02g02688 Csa-Chr2:23428044 Csa06g00579 Csa-Chr6:4976972 0 dispersed
Csa01g03359 Csa-Chr1:30160177 Csa02g02688 Csa-Chr2:23428044 7.08E-06 transposed
Csa03g02627 Csa-Chr3:24787450 Csa02g02688 Csa-Chr2:23428044 1.21E-19 transposed
Csa02g02688 Csa-Chr2:23428044 Csa06g03532 Csa-Chr6:28760373 0 wgd
Csa02g02688 Csa-Chr2:23428044 Csa07g00370 Csa-Chr7:2759169 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31054 PF01852 START 6.10E-60 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02688 K09338 - csv:101214763 1504.58