Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02691 ATGAACGATTTGCTCACGGATTCATTTGTTAGCAATGCCAAAGTCGAGTCTTCTAGAGAAATTGATCTCGAGAAGGGAACTCGAGTTCTGCGAAGCAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGACGTCGAGGTTCAAGTAGATAAGCTCGCTGGGCTTCTTATTAAACTGAAGGAAGCTAATGAAGAATCGAAGTCTGTTACAAAAGCATCAGAGATGAAAGCTATCAAAAAGCGAATGGAAAAGGATATTGATGAAGTGGGAAAAATAGCGCGCAATGTCAAGGGGAAGCTGGAGGCTGTAAATAAAGATAACTTGACCAATAGGCAGAGGCCTGGGTTCGAGAAGGGAACGGCCATTGACCGAGCAAGAATGAACGTGACAAATGCGTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACTCTTCGTCAAAGAATTCAAGCTGAGTACCGTGAAGTCGTGGAAAGACGAGTGATTACAGTTACGGGTACCAGACCAGATGAGACGACTATTGATCACCTAATAGAAACTGGAAACAGTGAGCAAATATTCAAGAATGCATTTGAACAAATGGGACGAGGACAGGTTATCAGTACTGTGGAAGAAATTCAAGAGCGACATGATGCAGTTAAAGAGATCGAGAAAAAGCTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTTTGGATAACATAGAAAATCAGGTAACGAACGCAGTCGATCACGTTCGAACGGGAACGGATGCACTCCAAACCGCAAAGAGCTTACAGAAGAGATCAAGAAAATGCATGATGATTGGCATCATATTGCTGCTGGTTATTGCAATTATAATCATCCTCTCAGTGCTGAAGCCATGGAAGAAGTAA 918 42.16 MNDLLTDSFVSNAKVESSREIDLEKGTRVLRSNSDMGMEAFNKQIQDVEVQVDKLAGLLIKLKEANEESKSVTKASEMKAIKKRMEKDIDEVGKIARNVKGKLEAVNKDNLTNRQRPGFEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQAEYREVVERRVITVTGTRPDETTIDHLIETGNSEQIFKNAFEQMGRGQVISTVEEIQERHDAVKEIEKKLSELHQIYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALQTAKSLQKRSRKCMMIGIILLLVIAIIIILSVLKPWKK* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23475336 23479035 + CsaV3_2G035100.1 Csa02g02691 520748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02691 305 CDD SynN 38 195 IPR006011 GO:0016020
Csa02g02691 305 PANTHER SYNTAXIN 4 299 IPR045242 -
Csa02g02691 305 Gene3D - 199 301 - -
Csa02g02691 305 Gene3D - 33 162 - -
Csa02g02691 305 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 4 299 - -
Csa02g02691 305 CDD SNARE_syntaxin1-like 207 269 - -
Csa02g02691 305 SMART tSNARE_6 203 270 IPR000727 -
Csa02g02691 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Csa02g02691 305 Pfam SNARE domain 244 296 IPR000727 -
Csa02g02691 305 SMART SynN_4 33 159 IPR006011 GO:0016020
Csa02g02691 305 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Csa02g02691 305 Coils Coil 38 68 - -
Csa02g02691 305 Pfam Syntaxin 41 242 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02691 Csa-Chr2:23475336 Csa03g04004 Csa-Chr3:34985908 1.01E-106 dispersed
Csa02g02691 Csa-Chr2:23475336 Csa02g02692 Csa-Chr2:23480767 6.31E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02691 K08486 - csv:101214355 559.296