Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02706 ATGGACAACCCTCCACCAAACTGGAATTGGCTCTTCGATTACTCTACAGTGGATGATCTCGCCGTCGTCGACCCTCGATTCTCGCCCCCACAGTCCATCAGTTTCTCCTGGTCCAATCCCTCCATCAATTTTTTATCTAAAGACAGCCTTGAGGTAGATTGTTCATATGAAGATCTGGACAGCACAAAGGAAGTGGGTCGGAAACGGCTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAAAACCACCCAAAAGCGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGATGACTGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCAAAGGAGGATTTGAAGGCAAAAATCAAAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCAAATCAGAGCAGTGAACACTCGAGCAGCTGATGTTCAGCATCCTCCCCCCACACTGTCAGCTGCATTTACCGCACAAGGGCAATCGGCTGGTAACAAATTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCTGTCGACATATCACAGGATCATGTGCTTCGCCCACCGGTTGCTTAA 717 47.14 MDNPPPNWNWLFDYSTVDDLAVVDPRFSPPQSISFSWSNPSINFLSKDSLEVDCSYEDLDSTKEVGRKRLRGETSAASTSKACREKQRRDKLNERFLELAAVLEPGKPPKSDKVAILSDAIRMMTDLQCETQKLRESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIRAVNTRAADVQHPPPTLSAAFTAQGQSAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23586273 23591605 - CsaV3_2G035250.1 Csa02g02706 520763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02706 238 Gene3D arf6 gtpase in complex with a specific effector, jip4 126 180 - -
Csa02g02706 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Csa02g02706 238 Pfam Helix-loop-helix DNA-binding domain 79 128 IPR011598 GO:0046983
Csa02g02706 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 151 IPR036638 GO:0046983
Csa02g02706 238 CDD bHLH_AtILR3_like 81 156 - -
Csa02g02706 238 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 5 238 - -
Csa02g02706 238 PANTHER BHLH TRANSCRIPTION FACTOR 5 238 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Csa02g02706 238 SMART finulus 82 133 IPR011598 GO:0046983
Csa02g02706 238 Coils Coil 124 179 - -
Csa02g02706 238 Gene3D - 68 125 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02706 Csa-Chr2:23586273 Csa03g02287 Csa-Chr3:20405212 3.44E-82 dispersed
Csa02g02706 Csa-Chr2:23586273 Csa06g03326 Csa-Chr6:27815147 2.33E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31058 PF00010 HLH 8.50E-10 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02706 - - csv:101212433 479.174