Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa02g02708 | ATGGTGATTCAGAGAGAAATGGAATTAAGAAGAGCTGGTTATGTGGTTGTTTTTGTGACTCTCCTTTGTGCATTGGCAATTGCGAGTTCAGAAGGCAGAAGGAAGACGGTCGAAATGGTTCTTACCAATGCCGATTACTATACATCATCGAACTTGGATAAAGATATGGGAGAGAAGGCATGCATGAAAGAATTAGCAGAGAAAGAATATGCACATGAACATGAAGAATCTCTTGTTCCTCACATCAAAACTGAAGACATGGGTGAAAAAACTATAAGAATTCTACCGCCTGATATGAAACAGGACGTGTTGGATTGCTTAAGAAAGAAAACTATGCTTTCTCGTAGTTCTGAATCAAGTTCTATTTTATTTGATCGGTTTAGCAAACCAATTGAACTGTCCTTAAATGGAGGGTCCAATATTCATATGAAACGTCTAATTAGATCATCGCAAGATTCATCAATACGGCATCTTGCTGAAGCTTCATCTCCACCTGCACCTCCGTCACCGTCGCCTGGAGCAGAGTCACCAGTAAATTCTCCATTACCGTCTCCTAGTCATGCTCCAATGCCATCACCAAGTCATGCCCCAACCAAGTCTCCAAACCATGCCCCAACCAAGTCTCCAAACCATGCCCCAGCCAAGTCTCCAAGTCATGCCCCAGCCAAGTCTCCAAGTCATGCCCCAGCCAAGTCTCCAAGTCATGCCCCAGACAAGTCTCCAAGTCATGCCCCAGCCAAGTCTCCAAGTCGTGCCCCAGCCAAGTCTCCAAGTCGTGCCCCAGCCAAGTCTTCATCACGAAACCTCCGTCCACCTGTTGAGGCTCCGCCACGATCTCGAGAACCGCCACCGGATGACACCGATGTTCCGGATTTGCCTACACCTTCTGTAGTTCGCTCGCCACCACCTCCACGTGCTTCTTCCAAATCTCGACCTCCAAAGAAGCATGAGGAAGACCAGACAGTCATAATTGCTGGTATTATAGCGGCTGGTTTGGGAGTTGTTCTTGTGGTTGCTTTACTTTTGTTCTGCTGTCGTAAAGGTGAGGAAAGTAAAATTGATCCAAAGGATGGGCAAAAGGATGAGAGACCTCTCTTAAACATATCTTTAAGTGAATTATCAGCAGGTTCTTCACAGAAGTCATACAACCTTGGAAATTCAGGTACGAATGCTGATAATGGAACTAAACCCTCCTCATTTGTTGGCAACTTATCAGTTAATCCTGAAAATGGTACCTCTATGGCTGAGGCTCAAACAACTGATGGTAAATCATCAGCAATGCCACATATAAAACCTCCTCCCGGAAGATTAGATTCTCAACCTCCTCCATCTGCACCAGCACCAGTGGTAGCACCTCCACCGCCTCCGCCGCCTGCTCCTAGAGCCCCACCACCACCACCTCTAAAAGTTGGTCGACCCCCACCTGCACCACCGGGAGCAATCCCTGGTAAATCTCAACCAGTGCCTATTGGGCCACATCGACGAGGACCTAGCGGCTCAAGCATGGATGCAGATTCAGGAAGCCAAAAGACCAAGTTAAAGCCCTTTTTCTGGGACAAGGTTCTTGCTAACCCTGGGCAATCTATGGTCTGGCACGAGATTAGTGCTGGATCATTCCAATTCAATGAGGAGATGATGGAGTCCTTGTTTGGATATACAGCAGTAGAAACTAACAAAGGCGACCGCAAGAAAGATTCAGTATCAGACCCTTCATTACAATACATTCAAATCATCGATGCTAAGAAAGCTCAAAACCTTTCAATTCTCCTACGAGCACTAAATGTAACAACAACAGAAGTATTAGATGCTCTTGAAGAAGGAAATCCTGATCTTCCAGCAGAGCTTTTACAGACCTTGTTGAAAATGGCACCAACAACAGAAGAGGAACTAAAACTTAGACTATTTTCAGGGGAGCTTTCTCAATTAGGTCCAGCAGAACGATTCCTTAAAGTGTTAGTGGATGTTCCTTTTGCTTTTAAACGATTAGAGTGTCTTCTCTTCATGCTCTCAATGTCGGAAGATGTCACTAACATTAAGGAATCATTCGCAACTCTAGAGGTCGCCAGCAACAATCTTAGAAACAGCAGGCTGTTTCTCAAGCTATTAGAAGCAGTTCTCAAAACTGGAAACCGAATGAACGATGGGACGTACCGTGGTGGTGCTCAGGCATTCAAGCTCGACACGCTCTTGAAACTGGCAGATGTTAAAGGAACTGACGGCAAGACTACGCTCTTACACTTCGTCGTACAAGAGATTATTCGTTCAGAAGGCATACGAGCAGCTCGTTCTGATAGACAAAGTCGAAGTTCATCCAGCATAGTCTCCAACGATACGATTTTTGAGGACTTCGCCGACGATTCAACGGAACATTATCGACAATTAGGTCTACAAGTGGTTTCTGGTTTGACCAAGGAGTTGGAAAACGTGAAAAAAGCGGCTGCAGTAGATGCGGATGGACTAACAACAACGATATCAAAACTTGGCCAATCTCTAATTAAAACAAAAGCATTTATAGACGCGGAGATGAAAAGTTTAGATGAAGACAGCAAATTCCACCAATCAATGTCGAAATTTTTAGAAGGAGCTGAAGCAGACATAGCGTGGATTGCAGTGGAAGAAAAGAAGATAATGGCGTTGGTGAAAAGCACGGTGGATTACTTCCATGGAAACTCAGGAAAGGAAGAAGGATTGAGATTGTTTACAATCGTACGCGATTTCTTGATTGTGTTGGACAAGACTTGTAAACAGGTGAAAGAAGCAGCTGAGGCTGCAGCCAAGCAAGCGAAGCATACCAAAAAAGAAACTGCCACACCGACGGCTGCTTGTCAACAGAATTCAGATCTAAGGCAGCGGCTATTTCCGGCCATTGTAGAACGACGAATAGGTGATGATGAGTCAAGTTCTTCGGAGGACGATGATGGGGAGAGTTCATCTTCATCATCATCATCATCCTAG | 2955 | 45.04 | MVIQREMELRRAGYVVVFVTLLCALAIASSEGRRKTVEMVLTNADYYTSSNLDKDMGEKACMKELAEKEYAHEHEESLVPHIKTEDMGEKTIRILPPDMKQDVLDCLRKKTMLSRSSESSSILFDRFSKPIELSLNGGSNIHMKRLIRSSQDSSIRHLAEASSPPAPPSPSPGAESPVNSPLPSPSHAPMPSPSHAPTKSPNHAPTKSPNHAPAKSPSHAPAKSPSHAPAKSPSHAPDKSPSHAPAKSPSRAPAKSPSRAPAKSSSRNLRPPVEAPPRSREPPPDDTDVPDLPTPSVVRSPPPPRASSKSRPPKKHEEDQTVIIAGIIAAGLGVVLVVALLLFCCRKGEESKIDPKDGQKDERPLLNISLSELSAGSSQKSYNLGNSGTNADNGTKPSSFVGNLSVNPENGTSMAEAQTTDGKSSAMPHIKPPPGRLDSQPPPSAPAPVVAPPPPPPPAPRAPPPPPLKVGRPPPAPPGAIPGKSQPVPIGPHRRGPSGSSMDADSGSQKTKLKPFFWDKVLANPGQSMVWHEISAGSFQFNEEMMESLFGYTAVETNKGDRKKDSVSDPSLQYIQIIDAKKAQNLSILLRALNVTTTEVLDALEEGNPDLPAELLQTLLKMAPTTEEELKLRLFSGELSQLGPAERFLKVLVDVPFAFKRLECLLFMLSMSEDVTNIKESFATLEVASNNLRNSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAARSDRQSRSSSSIVSNDTIFEDFADDSTEHYRQLGLQVVSGLTKELENVKKAAAVDADGLTTTISKLGQSLIKTKAFIDAEMKSLDEDSKFHQSMSKFLEGAEADIAWIAVEEKKIMALVKSTVDYFHGNSGKEEGLRLFTIVRDFLIVLDKTCKQVKEAAEAAAKQAKHTKKETATPTAACQQNSDLRQRLFPAIVERRIGDDESSSSEDDDGESSSSSSSSS* | 985 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 23598171 | 23602670 | + | CsaV3_2G035270.1 | Csa02g02708 | 520765 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa02g02708 | 984 | SMART | it6_source | 503 | 925 | IPR015425 | - | |
| Csa02g02708 | 984 | Gene3D | Formin, FH2 domain | 512 | 949 | IPR042201 | - | |
| Csa02g02708 | 984 | MobiDBLite | consensus disorder prediction | 163 | 198 | - | - | |
| Csa02g02708 | 984 | Coils | Coil | 914 | 934 | - | - | |
| Csa02g02708 | 984 | MobiDBLite | consensus disorder prediction | 376 | 425 | - | - | |
| Csa02g02708 | 984 | PANTHER | FORMIN-LIKE PROTEIN 3 | 7 | 970 | - | - | |
| Csa02g02708 | 984 | MobiDBLite | consensus disorder prediction | 934 | 950 | - | - | |
| Csa02g02708 | 984 | MobiDBLite | consensus disorder prediction | 151 | 317 | - | - | |
| Csa02g02708 | 984 | MobiDBLite | consensus disorder prediction | 199 | 213 | - | - | |
| Csa02g02708 | 984 | Pfam | Formin Homology 2 Domain | 508 | 909 | IPR015425 | - | |
| Csa02g02708 | 984 | MobiDBLite | consensus disorder prediction | 434 | 485 | - | - | |
| Csa02g02708 | 984 | PANTHER | FORMIN-RELATED | 7 | 970 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
| Csa02g02708 | 984 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 503 | 936 | IPR015425 | - | |
| Csa02g02708 | 984 | MobiDBLite | consensus disorder prediction | 376 | 510 | - | - | |
| Csa02g02708 | 984 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 453 | 928 | - | - | |
| Csa02g02708 | 984 | MobiDBLite | consensus disorder prediction | 927 | 984 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g02708 | Csa-Chr2:23598171 | Csa03g02281 | Csa-Chr3:20297910 | 0 | dispersed | |
| Csa06g03631 | Csa-Chr6:29271296 | Csa02g02708 | Csa-Chr2:23598171 | 3.65E-08 | dispersed | |
| Csa02g02708 | Csa-Chr2:23598171 | Csa02g01413 | Csa-Chr2:13503958 | 1.43E-128 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa02g02708 | - | - | csv:101206094 | 1506.5 |