Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02717 ATGCATCCTGATGATCAACAGCAGCAGCCGTTGATAGAGGAGGAAGAAGAAGAAACTGCTTACGACTTGACGGAGAAGGTTGTGGTAATTGGGATTGATGAAACGGAGTCTGATTCGGATGTGGGTTTGCTTCCGTTTTCATGGAGGAAGCTGTGGCTGTTCACAGGGCCTGGGTTTTTAATGAGTATAGCGTTTTTAGATCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTACAGCTGGATATTCTTTGTTGTGGCTTCTGTTGTGGGCTACGGCCATGGGGCTTTTGATCCAGTTGCTTTCAGCTAGGCTTGGCGTTGCCACTGGAAGGCACTTGGCTGAGCTTTGTAGAGAAGAGTACCCAACTTGGGCGAGGATTGTGCTGTGGGTCATGGCGGAGTTTGCCCTCATTGGGGCTGATATACAGGAAGTCATTGGGAGTGCTATTGCTATTAAGATTCTGAGTAATGGAGCTTTGCCTCTCTGGGCTGGAGTTACCATCACTGCTTTAGATTGTTTTATCTTCCTCTTTCTTGAGAACTATGGTGTGAGGAAACTGGAGGCTGTTTTTGCTGTTCTTATTGCTACAATGGCACTCTCATTTGCTTGGATGTTTGGTGATACTAAGCCTGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCCGTTGCTGTTGTGGGGTGTATCATTATGCCTCATAATGTATTTTTGCACTCTGCTCTTGTGCAGTCTCGGGATGTTGATCCAAGTAAGAAAGGGAGAGTCCAAGAAGCTCTGAGATACTACTCCATTGAGTCCACTCTTGCGCTTCTTGTCTCCTTCATCATCAACTTGTTTGTTACAACTGTATTTGCCAAAGCTTTCTACGGCACAGACATAGCAAATAGCATTGGACTTGTAAATGCAGGCCAATATCTTCAAGATAAGTATGGTGGAGGGCTTTTCCCCATTTTGTACATCTGGGCTATTGGTTTATTAGCTGCTGGCCAAAGTAGCACCATCACTGGTACCTATGCAGGACAGTTTATAATGAGTGGATTCCTGAACTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATAACTCGAAGCTTTGCAATCGTGCCCACTATGATTGTTGCTCTTGTATTCGAAACTTCTGACTCCATGGTGGATGTTCTGAATGAATGGCTTAACGTCCTCCAGTCAATTCAGATTCCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCAAAGGAACATCTAATGGGTACTTTTAGAATTGGCCCCGTTTTAAAGACAACCTCTTGGCTGGTGGCAGTCTTGGTCATGGCCATCAATGGGTATCTTCTGGTGAGCTTCTTCTCATCGGAAGTGAATGGAGTGGTCGTTGCCATTTTTGTGTTTGTCTTCATCGCTGCATATCTTGCCTTTGTTGTTTACCTCGTCTATCGAAGTATTTCATTTACAAGTTGGCACAACTTCATTAACCGGAAGACTTACGTGGGCAATGGAAACTGA 1533 44.49 MHPDDQQQQPLIEEEEEETAYDLTEKVVVIGIDETESDSDVGLLPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGATAGYSLLWLLLWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWAGVTITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVDPSKKGRVQEALRYYSIESTLALLVSFIINLFVTTVFAKAFYGTDIANSIGLVNAGQYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMSGFLNLKLKKWLRALITRSFAIVPTMIVALVFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGTFRIGPVLKTTSWLVAVLVMAINGYLLVSFFSSEVNGVVVAIFVFVFIAAYLAFVVYLVYRSISFTSWHNFINRKTYVGNGN* 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23658728 23661272 - CsaV3_2G035360.1 Csa02g02717 520774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02717 510 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 8 505 - -
Csa02g02717 510 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 505 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Csa02g02717 510 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02717 Csa-Chr2:23658728 Csa03g02976 Csa-Chr3:28377168 5.07E-109 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02717 K21398 - csv:101211711 947.192