Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02727 ATGGATTTTCTCTCTTCTTTCTTTCTTCTCTTGCTGGCTTTCCTTTTACTTCAACAACTCAGAACCCGCCGGAGAAATCTGCCTCCCAGCCCACCCTCCTTTCCGATTATTGGTCATCTCCATCTCCTACAACGCCCAACCCACCGGAACTTCCAAAACATCGCTGCCAAATACGGACCCATTTTCACTCTCCGATTCGGATCTCACCTTGCTGTCATAGTCTCTTCACTCCAAATAGCCCAAGAATGCTTCACCAAACACGATCTCATATTCGCCAACCGCCCGCGTTTGCTGAGCGGAAAATACCTCGGCTACAGCTGGACCACCATGGCTGCCGCCTCTTACGGCGACCATTGGCGGAACCTCCGCCGCCTCGCCGCCATGGAGATCTTCTCCCCGACGCGCCTCAACGCGTCTCTCGCCTTCCGGAAGGATGAAATCCAGCGATTGTTGGTCAAACTCCATTCGGAATCATTCGCCAAGGTGGAGTTGACACCCATGTTTTCGGAACTGAGTTTCAACATCGTGATGAGGGTCGTGGCCGGAAAGAGGTACTACGGGGAGAAGGTTTCCGATGATGCGGAAGCGAGGAAGTTCAGAGAGCTTATGGATGAGGTTTCGCGTCAGGGAGGAACTTCGCAGTGGGTGGATTTCATGCCGATTATGAAATGGATTGGGTTTGGTGGATATGAGAAGATTTTGGCCAAATCGGCAATATGGGCCGATCGATTTGTCCAGGAATTGGTTGATGAACATCGGAATAAGAAAGTATTGGGAAGAGAAGAACAGAGTTCTCTGCTTCATCGGCTTCTGGAATTACAGCTCTCGCAACCGGAATATTACACCGATCAGATCATCAAAGGGCTTGTTCTGGTTTTGTTGCGTGCGGGAATAGACACGTCATCTGTGACCTTGGACTGGGCAATGACTGAACTACTCAACCATCCGGAGGTATTAGCCAAAGCCAAAGCTGAGATAGACACCAAGATCGGTCAAGATCGTACCGTTGAGGAAACAGATGTCGCCAACCTCAACTACCTTCAAGCCATTATTTCTGAAACCTTTCGTTTGCACCCTCCAGCCCCGATGCTTCTCACACACTATTCCTCTGACGACTGCGTTGTCGCAGGCTACAACATTCCACGTGGGACGATGTTGTTGGTCAATGCTTCAGCAATTCACAGAGACCCGAAGTCGTGGGATGACCCAACTAGTTTTCGACCAGAGAGATTCTTGGGAGCAGGGAATGAGTTACAGACCAACAAACTCATTCCTTTTGGAGTTGGAAGGAGGGCTTGTCCTGGAGAAATTATGGGTTTACGTGTTGTAGGATTGACTTTGGGTCTATTGATTCAATGCTATGAGTGGAAAAAACATGGATATGATAACGTAGACACGACTGAATATGGAGGTATCACCATTCTCAAAGTGAAGCCTGTGGAGACCATGTGTAAACCTCGTCCAGTTATGGCAAAACTTCTATCAAATAGTTTGGACTAA 1500 48.67 MDFLSSFFLLLLAFLLLQQLRTRRRNLPPSPPSFPIIGHLHLLQRPTHRNFQNIAAKYGPIFTLRFGSHLAVIVSSLQIAQECFTKHDLIFANRPRLLSGKYLGYSWTTMAAASYGDHWRNLRRLAAMEIFSPTRLNASLAFRKDEIQRLLVKLHSESFAKVELTPMFSELSFNIVMRVVAGKRYYGEKVSDDAEARKFRELMDEVSRQGGTSQWVDFMPIMKWIGFGGYEKILAKSAIWADRFVQELVDEHRNKKVLGREEQSSLLHRLLELQLSQPEYYTDQIIKGLVLVLLRAGIDTSSVTLDWAMTELLNHPEVLAKAKAEIDTKIGQDRTVEETDVANLNYLQAIISETFRLHPPAPMLLTHYSSDDCVVAGYNIPRGTMLLVNASAIHRDPKSWDDPTSFRPERFLGAGNELQTNKLIPFGVGRRACPGEIMGLRVVGLTLGLLIQCYEWKKHGYDNVDTTEYGGITILKVKPVETMCKPRPVMAKLLSNSLD* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23724960 23727750 + CsaV3_2G035460.1 Csa02g02727 520784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02727 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Csa02g02727 499 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 492 - -
Csa02g02727 499 PANTHER CYTOCHROME P450 FAMILY PROTEIN 4 492 - -
Csa02g02727 499 SUPERFAMILY Cytochrome P450 28 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 Pfam Cytochrome P450 28 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 Gene3D Cytochrome P450 20 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS E-class P450 group I signature 171 189 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa02g02727 499 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02727 Csa-Chr2:23724960 Csa06g02979 Csa-Chr6:25742453 0 dispersed
Csa02g02725 Csa-Chr2:23708458 Csa02g02727 Csa-Chr2:23724960 8.23E-169 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02727 K13260 - csv:101210967 957.592