Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02744 ATGGCGGTGGAGCTCCTCTCCGGCTTCACCAACGCTCCTCAACTCTCCTCCCGATCCCCTATGGACCAAGACTCCGCCGTTCAAGAAGCCGCCTCCGGTCTCGACACCCTCAAAAAGCTCGTCACATTACTCTCTCATTCTCCCCCTTCTAATCTCGACTCCGATTGCCAAGCCGTCGCCAACGCCGCTGTCTCCCACTTCCGCAAGGCCATATCTCTCCTCGGCCGCTCCTCTAGGACCGGCCATGCCCGATTCCGCCGTGCCCCTTTAGATTCCTCTAAAATCTATAACGCTACCCCCATTCAACAAATCCCTCCCCCCTCCCTTGACCGCCTCGACTCCGCCACCACCATCAATTTCTCCTACTCCACTGCTCCTACTTCCTCCTTCTTAACCTCCCTTCCTGCTTCCGATTCAGAAATTAAGCTCCAGCATCAACCCTCTTCCTCTTCTTTTCAGATTACTGATCTTTCCAGAGTTTCCTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGAAAGTGCGGTTCTGAGAATTTGGGCTCTGGGAAATGCGCCGGATCTTCTGGTGGTCGTTGCCACTGCTCTAAGAAAAGAAAATTGAGGTTGAAAAGGGTGGTAAGAGTACCAGCAATAAGTTCAAAGAACGCTGATATTCCTCCAGATGATTATTCGTGGAGGAAGTACGGGCAAAAGCCGATTAAGGGTTCTCCATATCCAAGAGGTTACTATAAGTGTAGCAGTTTACGAGGATGTCCGGCAAGAAAACACGTTGAGAGAGCGTCAGACGATCCATCTATGTTAATAGTAACGTACGAAGGCGATCATAATCACTCTCAATCAGTTGCAGAAGCTTCAAGTCTCATCCTTGAATCTTGGTGA 882 50.23 MAVELLSGFTNAPQLSSRSPMDQDSAVQEAASGLDTLKKLVTLLSHSPPSNLDSDCQAVANAAVSHFRKAISLLGRSSRTGHARFRRAPLDSSKIYNATPIQQIPPPSLDRLDSATTINFSYSTAPTSSFLTSLPASDSEIKLQHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCAGSSGGRCHCSKKRKLRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23904722 23906085 + CsaV3_2G035630.1 Csa02g02744 520801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02744 293 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa02g02744 293 ProSiteProfiles WRKY domain profile. 215 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa02g02744 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 292 IPR044810 GO:0003700
Csa02g02744 293 SUPERFAMILY WRKY DNA-binding domain 216 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa02g02744 293 SMART WRKY_cls 220 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa02g02744 293 Pfam Plant zinc cluster domain 172 218 IPR018872 -
Csa02g02744 293 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 20 292 - -
Csa02g02744 293 MobiDBLite consensus disorder prediction 9 29 - -
Csa02g02744 293 Gene3D WRKY domain 206 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa02g02744 293 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02744 Csa-Chr2:23904722 Csa04g02431 Csa-Chr4:24478962 5.45E-14 dispersed
Csa02g02744 Csa-Chr2:23904722 Csa06g02959 Csa-Chr6:25618485 6.13E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31060 PF03106 WRKY 2.60E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02744 - - csv:101209733 567.77