Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02828 ATGCTAACCCACATCTTCCTCCTCTTCCTTGTTTTTCCCTATCTTCCTCTCTTAGTTGACTCAATTTATTTCAAAATCGATCAAATCAAACCAAACGAAAACCGTTTACTTTACCAAGGAGATGCAGTACCTAATAATGGAGGAATTATATTCAGTGATCCTGCATATTCCTGTCTTGTTGGTCAAGCTATTTACAAAGATGCTATCCCAATTTGGGACTCTCAAACAGAAAAACTCACTGATTTCACAACCCAATTCTCCTTCACCATTGATACTCAAAATGCTTTACACTATGGAAATGGGGTTGCTTTTTTCTTGGCTCCAGCTGGTTTTCATATCCCTCCAAACTCAGCTGGTGGGTATCTTGGCCTTTTCAATAAGACCTATACTGAATCATCCATAAACCAAATTGTTCATGTTGAGTTTGATTCTTACCCTAATGAATGGGATCCTAATTTTGAACATGTGGGTATCAACATTAACTCTGTTTCTTCCTCTAATTTCACGAAGTGGAATGTCAGCTTACATAGTTTGGACACTGTTGACGTGTTTATCTCATATGATTCAACCACCAAATACTTGAGTGTTTCATGGAATTATGAAAAGACACCAATTTCTCTTGAAAATACAACTTTGAGTTACATGGTTGATCTTATGAAGATTCTTCCTCAATGGGCTACAGTTGGATTTTCAGCTGCAACGGGGGCATATTTAGAGAGACATTTGCTATTTTCTTGGGAGTTCAATTCCAGTTTGGAAATGAAAGAAACAGTTGGAGTTGGTACTGAAAAAAATGGGAAAAAAGTTGATGTAATTGTGGGTGTGACTGTTTCAGTAGGAGCTTCAATTCTCATGGCAATTGTAGCTTTTGTGGTACGTCGGAGATTGAAGCAAAAGAAAAGAAAATCAGAAAAAAAGGTGGCTGAGGAGATCAACTTGACATCCATTAATGATGATTTGGAAAGAGGGGCTGGACCTAGAAGGTTTTCTCATAAGCTTCTTGCCATGGCTACCAACAACTTCTCCAATGAAAGGAAGCTTGGTCAAGGAGGATTCGGAGCAGTGTATAGAGGGTATATACCAGACATAGATTTGGCAGTGGCCGTGAAGAAAATCTCAAGGGGTTCAAGACAGGGGAGGAAAGAGTATATAACTGAAGTGAAGATCATTAGTCGGCTTCGCCATCGAAATTTGGTGCAACTCGTTGGTTGGTGTCATGATAAGGGTGAGTTCTTGTTGGTTTACGAATTCATGCCTAATGGCAGTCTTGATTCTCATCTCTTTGGTAAGAGGGCCCATCTTGCTTGGGCTGTGAGATATAAAGTTGCTTTAGGTTTAGCCTCTGCTTTGCTCTATCTTCACGAAGAAGGGGAACAGTGTGTGGTTCATAGAGATATTAAATCAAGTAATGTTATGTTAGATTCGAACTTTAACGTCAAGCTTGGAGATTTTGGGTTGGCTCGATTAATGGACCATGAGTTGGGTGCTCAAACAACTGGGTTGGTTGGAACTTTAGGCTACTTAGCTCCTGAATACATCAGCACAGGTAGAGCTAGTAAAGAATCTGATGTGTTTAGTTTTGGGGTTGTTGCTTTGGAGATTGCCACGGGAAGAATGTCAAGAACCTCCATGGAAGCTGAATCTCATAAGGGTCTGGTGGAGTGGGTTTGGAATCTTTATGGGAGTGCGCAATTGATTGATGGCATGGATGAGAAAATGCAATCTGATTTTGACAAAAAACAAGTGGAGTGTTTGATGCTTGTTGGATTATGGAGTGCTTATCCTGACCCTAATCTTCGACCTTCCATAAAACAAGTAATTCAAGTTCTTAACTTTGAGACAACCATGCCAAATCTTCCAAATAAAATGCCTGTTCCTATCTATTCTGCTCCTCCCACATCGATGAGTTCAAATGAAGCTTCCATTACAGTAAGTCTTGACATGGGTCGTTAA 1953 39.89 MLTHIFLLFLVFPYLPLLVDSIYFKIDQIKPNENRLLYQGDAVPNNGGIIFSDPAYSCLVGQAIYKDAIPIWDSQTEKLTDFTTQFSFTIDTQNALHYGNGVAFFLAPAGFHIPPNSAGGYLGLFNKTYTESSINQIVHVEFDSYPNEWDPNFEHVGININSVSSSNFTKWNVSLHSLDTVDVFISYDSTTKYLSVSWNYEKTPISLENTTLSYMVDLMKILPQWATVGFSAATGAYLERHLLFSWEFNSSLEMKETVGVGTEKNGKKVDVIVGVTVSVGASILMAIVAFVVRRRLKQKKRKSEKKVAEEINLTSINDDLERGAGPRRFSHKLLAMATNNFSNERKLGQGGFGAVYRGYIPDIDLAVAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLVGWCHDKGEFLLVYEFMPNGSLDSHLFGKRAHLAWAVRYKVALGLASALLYLHEEGEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIATGRMSRTSMEAESHKGLVEWVWNLYGSAQLIDGMDEKMQSDFDKKQVECLMLVGLWSAYPDPNLRPSIKQVIQVLNFETTMPNLPNKMPVPIYSAPPTSMSSNEASITVSLDMGR* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24593581 24595533 + CsaV3_2G036470.1 Csa02g02828 520885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02828 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Csa02g02828 650 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 254 IPR013320 -
Csa02g02828 650 Gene3D - 19 261 - -
Csa02g02828 650 PANTHER PUTATIVE-RELATED 18 650 - -
Csa02g02828 650 SUPERFAMILY Protein kinase-like (PK-like) 325 633 IPR011009 -
Csa02g02828 650 Pfam Protein kinase domain 342 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02828 650 PANTHER - 18 650 - -
Csa02g02828 650 ProSiteProfiles Protein kinase domain profile. 341 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02828 650 ProSitePatterns Protein kinases ATP-binding region signature. 347 371 IPR017441 GO:0005524
Csa02g02828 650 Pfam Legume lectin domain 24 256 IPR001220 GO:0030246
Csa02g02828 650 SMART serkin_6 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02828 650 CDD lectin_legume_LecRK_Arcelin_ConA 22 252 IPR001220 GO:0030246
Csa02g02828 650 Coils Coil 293 313 - -
Csa02g02828 650 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Csa02g02828 650 CDD STKc_IRAK 347 611 - -
Csa02g02828 650 Gene3D Transferase(Phosphotransferase) domain 1 418 631 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02828 Csa-Chr2:24593581 Csa02g02834 Csa-Chr2:24629504 0 dispersed
Csa03g00700 Csa-Chr3:6304494 Csa02g02828 Csa-Chr2:24593581 4.00E-100 dispersed
Csa02g02828 Csa-Chr2:24593581 Csa02g02829 Csa-Chr2:24602109 6.47E-43 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77938 PF00069 Pkinase 7.00E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02828 - - csv:101204075 1263.83