Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02834 ATGGCTAATTTCTTGTATGTCTTTTCAATGCTAAGCCATTTCATCCTGTTTCTCAATCTTCCTCTCTCTGTTATCTCTGTTTCTTTCAAAATAGACCAATTCAAAAGCGATGATAACACCATACTTTATCAAGGAGATGCTGTTGTTCTTGGTGGAGAGATTTTACTAAGTGATCCTGAATTTTCTTGTCATGTTGGTCGTGCTATTTACAAAGATCCAATCCAAATTTGGGATTCTGAAACAGCAAAACTCACTGATTTCACAACCCATTTCACCTTCACCATTGATACACAAAAAGTTCCAGACTATGGCCAAGGCTTTGTTTTTTTCTTGGCTCCATCTGGTTTTCAAATCCCTCCAAATTCAGCTGGTGGGTTTCTTGGCCTTTACAACAAAACGTACAGCAATTCAGTTACTAATCAAATTGTTCATGTTGAGTTTGATACTGGCTCAAATGGCTGGGATCCTCCATATGCACACGTGGGTATAAATATTAACTCTGTTACTTCTTCCAATGACACTCGTTGGAATGTTAGCTTGCACAGTGGGGATTTGGCTGAAGTGTGGATTTCCTATAATTCAACAATCAAACTCTTGAGTGTATCTTGGAAATACCAAAAGACATCCACTTTATTAGAGAATACCACTCTGAGTTATCCTATTGACTTAACGACCGTTCTTCCACAACAAGCGACTGTGGGATTCTCAGCCGCAACTGGTGCTCATTTAGAGAGACATTCTGTATCTTCCTGGGAATTCAACTCTACTTTGGACATGAAGCCAACAAGTATAAGTGCTGGAAACAAAGTTAGTGTAATTGTAGGTGTAACAGTGTCGGTTGGAGGCTTAATTCTTGTGGGAATTATAGTATTTGTAACACTTTCAAGGTTGAAGGAAAAGAAAAGGAAAAAAGATCAAGAAAATCTTGAGGAAGTAAATTTGACATCCATTAATGATGATTTGGAAAGAGGGGCTGGACCTAGAAGGTTTTCTCACAAGCTTCTTGCTATGGCAACAAACAACTTCTCAAATGAAAGAAAGTTAGGGGAAGGAGGATTTGGTGCTGTGTATAGAGGCTACATACAAGATTTGGATTTGAATATAGCTGTGAAGAAAATCTCAAGGGGTTCGAGGCAGGGGAGAAAAGAGTATATAACCGAAGTGAAGATCATTAGTCGACTTCGTCATCGAAATTTGGTGCAACTCATTGGTTGGTGTCATGATAAGGGTGAGTTCTTGTTGGTTTATGAATTCATGTCTAATGGTAGTCTTGATTCTCATCTCTTTGGTAAGAGAACCCCTCTTGCTTGGAGTGTGAGATACAAGATTGCGTTAGGTTTGGGCTCCGCTTTGCTGTATCTTCATGAAGAAGGGGAACAATGCGTGGTTCATAGAGATATCAAATCTAGTAATATCATGTTGGATTCAAACTTCAATGTCAAGCTTGGAGATTTTGGACTCGCCCGATTAATGGACCATGAGTTGGGTGCTCAAACAACTGGGTTGGTAGGAACTTTGGGCTACTTAGCTCCTGAATACATAAACACAGGTAGAGCTAGTAAAGAATCTGATGTGTTCAGTTTTGGAGTTGTTGCTTTGGAGATTGCCACTGGGAGAGTGTCAAGAACCTCGATGGAAAAGGAATCTCACAAGGGTTTGGTGGAGTGGGTTTGGGATCTTTATGGGAGTGGACAATTACTTGAGGGTGTGGATGCGAAATTACAATCTAATTTTGACAAAAAACAAGTTGAATGTTTGATGGTTGTTGGATTATGGAGTGCTTATCCAGACCCTAATTTTAGACCTTCCATAAAACAAGTGATTCAAGTTCTTAACTTTGAGGCTGCAGTGCCAAATCTTCCAAATAAAATGCCTGTTCCTACATATAATGCTCCTTCCACATCAATGAGCTCAAATGAACCTTCCTTTACTGTCAGTCTTGACATGGGTCGTTGA 1956 39.57 MANFLYVFSMLSHFILFLNLPLSVISVSFKIDQFKSDDNTILYQGDAVVLGGEILLSDPEFSCHVGRAIYKDPIQIWDSETAKLTDFTTHFTFTIDTQKVPDYGQGFVFFLAPSGFQIPPNSAGGFLGLYNKTYSNSVTNQIVHVEFDTGSNGWDPPYAHVGININSVTSSNDTRWNVSLHSGDLAEVWISYNSTIKLLSVSWKYQKTSTLLENTTLSYPIDLTTVLPQQATVGFSAATGAHLERHSVSSWEFNSTLDMKPTSISAGNKVSVIVGVTVSVGGLILVGIIVFVTLSRLKEKKRKKDQENLEEVNLTSINDDLERGAGPRRFSHKLLAMATNNFSNERKLGEGGFGAVYRGYIQDLDLNIAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMSNGSLDSHLFGKRTPLAWSVRYKIALGLGSALLYLHEEGEQCVVHRDIKSSNIMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYINTGRASKESDVFSFGVVALEIATGRVSRTSMEKESHKGLVEWVWDLYGSGQLLEGVDAKLQSNFDKKQVECLMVVGLWSAYPDPNFRPSIKQVIQVLNFEAAVPNLPNKMPVPTYNAPSTSMSSNEPSFTVSLDMGR* 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24629504 24631805 + CsaV3_2G036530.1 Csa02g02834 520891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02834 651 Gene3D Transferase(Phosphotransferase) domain 1 419 633 - -
Csa02g02834 651 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 22 650 - -
Csa02g02834 651 SUPERFAMILY Protein kinase-like (PK-like) 326 634 IPR011009 -
Csa02g02834 651 Gene3D - 25 268 - -
Csa02g02834 651 MobiDBLite consensus disorder prediction 629 645 - -
Csa02g02834 651 CDD STKc_IRAK 348 612 - -
Csa02g02834 651 PANTHER - 22 650 - -
Csa02g02834 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 265 IPR013320 -
Csa02g02834 651 CDD lectin_legume_LecRK_Arcelin_ConA 27 257 IPR001220 GO:0030246
Csa02g02834 651 Pfam Protein kinase domain 343 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02834 651 MobiDBLite consensus disorder prediction 629 651 - -
Csa02g02834 651 ProSitePatterns Protein kinases ATP-binding region signature. 348 372 IPR017441 GO:0005524
Csa02g02834 651 ProSiteProfiles Protein kinase domain profile. 342 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02834 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Csa02g02834 651 Pfam Legume lectin domain 27 261 IPR001220 GO:0030246
Csa02g02834 651 SMART serkin_6 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02834 651 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02828 Csa-Chr2:24593581 Csa02g02834 Csa-Chr2:24629504 0 dispersed
Csa02g02829 Csa-Chr2:24602109 Csa02g02834 Csa-Chr2:24629504 1.64E-44 dispersed
Csa02g02830 Csa-Chr2:24608653 Csa02g02834 Csa-Chr2:24629504 0 dispersed
Csa02g02834 Csa-Chr2:24629504 Csa03g00698 Csa-Chr3:6286267 0 dispersed
Csa02g02834 Csa-Chr2:24629504 Csa02g02836 Csa-Chr2:24636725 1.89E-113 proximal
Csa02g02834 Csa-Chr2:24629504 Csa02g02835 Csa-Chr2:24635709 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77940 PF00069 Pkinase 1.10E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02834 - - csv:101218247 1268.06