Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g02835 ATGGCTACCAACAACTTCTCCAAAGAAAGGAAGCTTGGCCAAGGAGGATTTGGAGCAGTGTATAGAGGGTATATACCAGACATAGATTTGTCAGTGGCTGTGAAGAAAATCTCGAGGGGTTCAAGACAGGGGAGAAAAGAGTATATAACTGAGGTAAAGATCATTAGTCGGCTTCGTCATCGAAATTTGGTGCAACTCATTGGTTGGTGTCATGATAAAGGTGAGTTCTTGTTGGTTTATGAATTCATGCCTAATGGTAGTCTTGATTCTCATCTTTTTGGCAAGAGAGCCCCTCTTGCTTGGACTGTGAGATACAAGATTGCTTTAGGTTTAGCCTCCGCTTTGCTATATCTTCATGAGGAAGGAGAACAGTGTGTGGTTCATAGAGATATTAAATCTAGTAATATCATGTTAGATTCAAACTTCAATGTCAAGCTTGGAGATTTTGGGTTAGCTCGATTAATGGACCATGAGTTGGGGGCTCAAACAACTGGGTTGGTTGGAACTTTAGGCTACTTAGCTCCTGAATACATAAGCACAGGTAGAGCTAGTAAAGAGTCAGACGTGTTTAGTTTTGGAGTTGTTGCTTTAGAGATTGCAACGGGAAGAATGTCGAGAAACTCCATGGAAATGGAATCTCATAAGGGTTTGGTAGAGTGGGTTTGGGATCTTCACGGGAATGGAAAGCTTTTAATGGGAATGGATGAGAAATTGGTGGAATCTGATTATGAGCAAAAACAAGTAGAGTGTTTGATGCTTGTTGGACTTTGGAGTGCTTATCCAGATCCTAATCTAAGACCTTCAATCAGACAAGTGATACAAGTTCTTAACTTTGAAACAACAATGCCAAACCTTCCAAGTAAAATGCCTATCGCTGTGTATCATCCTCCTTCCACATCAATGAGCTCAAATGAACCAATAATTACTGCAAGCCTTGATGTGGGTCGTTGA 951 40.9 MATNNFSKERKLGQGGFGAVYRGYIPDIDLSVAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDSHLFGKRAPLAWTVRYKIALGLASALLYLHEEGEQCVVHRDIKSSNIMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIATGRMSRNSMEMESHKGLVEWVWDLHGNGKLLMGMDEKLVESDYEQKQVECLMLVGLWSAYPDPNLRPSIRQVIQVLNFETTMPNLPSKMPIAVYHPPSTSMSSNEPIITASLDVGR* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24635709 24636659 - CsaV3_2G036540.1 Csa02g02835 520892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g02835 316 ProSiteProfiles Protein kinase domain profile. 6 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02835 316 ProSitePatterns Protein kinases ATP-binding region signature. 12 36 IPR017441 GO:0005524
Csa02g02835 316 PANTHER PUTATIVE-RELATED 2 316 - -
Csa02g02835 316 PIRSF ILK 246 280 - -
Csa02g02835 316 PIRSF ILK 1 221 - -
Csa02g02835 316 CDD STKc_IRAK 12 277 - -
Csa02g02835 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Csa02g02835 316 Gene3D Transferase(Phosphotransferase) domain 1 83 298 - -
Csa02g02835 316 PANTHER - 2 316 - -
Csa02g02835 316 SUPERFAMILY Protein kinase-like (PK-like) 2 299 IPR011009 -
Csa02g02835 316 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Csa02g02835 316 SMART serkin_6 6 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g02835 316 Pfam Protein kinase domain 6 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02835 Csa-Chr2:24635709 Csa07g00618 Csa-Chr7:4492517 1.68E-140 dispersed
Csa02g02834 Csa-Chr2:24629504 Csa02g02835 Csa-Chr2:24635709 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77941 PF00069 Pkinase 2.50E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g02835 - - csv:101203101 637.106