Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00005 ATGGATTTTCACACAAACCCTTCCCCACAAAACGTGAATGTAGCATTCAAATCAACGCGCTATCTCCCCAACCCCCTGCCTTTAAAGTTCCTTTCCCTCACCTTCCAACTGGACTCTTCATTTACTTCACCGATTTTTGTTTTAATTTTGCTTCATCATCCCATACATACTGGCCAGGCCAAAGGCAGCTCAATAATTCCTATCTTAATGGCCAAATTAACTACACAAACCCTTCAGTTTTGCTGCCTCTTGATCCTTTTGTTTCCCATGCTGCTTCCGGCCAGCTCTCCACCGGATCTTGTGCAGACAGAGTGCTTGAGCGTACCCTCCTCCCAGTTCTCCAACTCACTCCTCTCCACCATCGATGTTGTACGACAGGTTATGGCCATTTTCTCTCCGTTCAGTAAATTACTGGGAGACTTCCGGCTTTCCACCGCCATTTCCGACTGTCTCGATTTGCTTGACTCCTCTGCTGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAGAATCCCAAGGCTAAAAACCATAGCACGGGAGATCTGAGTTCTGATCTGAAGACATGGCTGAGCGCTGCAGTGGTTAATCCGGAAACATGCATGGATGGATTTGAGGGCACCAATAGCATTATCAAAGGTCTAGTATCTGGAGGCGTTAACCAGTTAACTTCACAGCTCTATGACCTTCTTTCCATGGTGAAATCAATCCCCAATCAACCGAGCGAGTTTCCTTCATGGCTGAAATCTGAGGACCAGAACTTGCTGCAAATAAATGACTTGGCCGCCGATGCCACAGTGGCCGCCGACGGGACTGGGGATTTCACCAATGTGATGGATGCGGTACTAGCAGCCCCTGACAATAGCATACGACGTTATGTCATATACATAAAGAAGGGTGTGTACTTGGAGAACGTGGAGATCAAGAAGAAGAAGTGGAATCTCATGATGATTGGGGATGGAATAGATGCCACCATCATATCGGGTAACCGCAGTTTTATTGACGGTTGGACAACATTCCGATCAGCGACCTTCGCTGTAAGTGGAAGAGGATTCATAGCGCGAGACATAACATTCGAGAATACTGCAGGAGCAGAGAAACATCAAGCAGTGGCACTTAGATCGGACTCCGATCTGTCGGTGTTTTTTAGATGTCGAATTAGAGGCTACCAAGACACGCTGTATACGCACACCATGCGCCAATTTTACCGCGAGTGCCAAATCAGTGGGACCGTTGATTTTCTTTTCGGCGATGCCACCGTCGTTTTTCAAAACTGCAGCATCCTGGCGAAGAAGGGTCTTCCCAACCAGAAAAACACCATCACTGCTCAGGGCCGGAAAGACCCAAACCAACCCACCGGTTTCTCCATTCAATTCTGCAACATATCTGCGGATTCAGACCTTAAACCCTCGGTTAACACTACTGCTACGTACCTTGGAAGACCATGGAAGGAATATTCCAGAACCATTATCATGCAATCATACATCAGCGATGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGCCAATTTTGCATTGAATACACTATTCTACGCTGAGTTTATGAATTACGGACCGGGGGCGGGATTGGCCAAGCGTGTCAATTGGCCCGGTTACCACCGACTGAATCAAACCAGTGAAGCTACTAACTTCACCGTGGCTCAATTCATTGAAGGAAACCTGTGGCTGCCGTCCACGGGTGTCAAATACACTGCAGGACTGGGAGCTAATTAG 1731 48.06 MDFHTNPSPQNVNVAFKSTRYLPNPLPLKFLSLTFQLDSSFTSPIFVLILLHHPIHTGQAKGSSIIPILMAKLTTQTLQFCCLLILLFPMLLPASSPPDLVQTECLSVPSSQFSNSLLSTIDVVRQVMAIFSPFSKLLGDFRLSTAISDCLDLLDSSADQLSWSLSATQNPKAKNHSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIIKGLVSGGVNQLTSQLYDLLSMVKSIPNQPSEFPSWLKSEDQNLLQINDLAADATVAADGTGDFTNVMDAVLAAPDNSIRRYVIYIKKGVYLENVEIKKKKWNLMMIGDGIDATIISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGAEKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLKPSVNTTATYLGRPWKEYSRTIIMQSYISDAIRPEGWLEWNANFALNTLFYAEFMNYGPGAGLAKRVNWPGYHRLNQTSEATNFTVAQFIEGNLWLPSTGVKYTAGLGAN* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 181308 185285 + CsaV3_3G000050.1 Csa03g00005 520910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00005 576 Pfam Pectinesterase 262 559 IPR000070 GO:0030599|GO:0042545
Csa03g00005 576 Pfam Plant invertase/pectin methylesterase inhibitor 142 227 IPR006501 GO:0004857
Csa03g00005 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 117 235 IPR035513 -
Csa03g00005 576 SMART PMEI_2 96 235 IPR006501 GO:0004857
Csa03g00005 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 102 237 IPR035513 -
Csa03g00005 576 SUPERFAMILY Pectin lyase-like 260 572 IPR011050 -
Csa03g00005 576 PANTHER PECTINESTERASE 239 573 - -
Csa03g00005 576 PANTHER PECTINESTERASE 106 234 - -
Csa03g00005 576 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 239 573 - -
Csa03g00005 576 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 106 234 - -
Csa03g00005 576 CDD PMEI-like_4 94 236 - -
Csa03g00005 576 Gene3D - 256 573 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02746 Csa-Chr1:24347384 Csa03g00005 Csa-Chr3:181308 6.06E-170 dispersed
Csa03g00005 Csa-Chr3:181308 Csa07g01869 Csa-Chr7:18705097 2.35E-152 dispersed
Csa03g00005 Csa-Chr3:181308 Csa03g01994 Csa-Chr3:15703537 4.61E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00005 K01051 - csv:101207185 1105.51