Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00008 ATGGGTACTAGTGATTGGAATTCGCTTCTAGAAAGATTTGTACCGAGACAAATTGCCATAACAAGACCAAAGCGAGAGTGGGAGTTGGATATTCTCTCGCGTTTTCGTTCAATGGAACATCTGACAAAGGATGACGCAAGACAACAATTTCTTCGAATATTGAGAACACTTCCTTATGGGAATTCAGTTTTCTTTGGCGTCCGGAAGATTGATGATCCCATTGGACTTCTACCTGGACGAATCATTTTGGTTCCAAAGGAGTATTTACATTCTGCTGAATTAAGAGATATAATGCAGTTCGGTAGCAGTAACACTGCAGTCTTTTTTAAGATGAGAGTTGCGGGTGTCCTACACATTTTCCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGCATTGCTCTCCAGACACACATAAATGATGTCATGTTGCGTCGTTACTCTAAAGCTCGATCTGCTGCTGTTGGCTCCATGCTTGGAGACTCTTCCTGCAACTTGAAGACTCAAAGTGTGGAAGCATATGAGAAACGAGTTCAAGATTTGAGTAAGGGCATTGAAGAGTCTAAGAGAAATGCTGAACAATTGCTGAAGGAATTGCATGAAAAGAATAAGCAAGAAGTGGTAATGCAAGAAGAATTGGAAGCTCTAAAAGAATCTTTGAGATTTGAAAAGCAGAACTTAGCTGAGGCAACACATAATCTTGAGAGGTTGAGATCGCAATATGATGAAAAAGACAATGAACATCAGATCATGTTAACCGAGAGAAGGAGTCTGGAAGCAAAAATTGCAAAATTGAGCACTATGATGTTGGAAAATAATGGGAAAAAAGATACGGTTGGAATTGATGAACAGCTTCTACAAAAACTTCAAGATGAGTTGAGGCTTCGAAATGATGAGTTGCAAGCGTCTGAAGAAATTAGAAAGAAACTGGTAAATGAAAAGCTGTTCTTGGAACAAAGAATTTTTGGACTTGAGAAGAAGACTAGCAATGAGATGGAACATCTCCAGATAAGCTTTGAACATGAACGCAAAGTCTTGAAGCTGAGAGTGGCAGAACTTGAAAAAAAACTTGAAGAAGTAACTCAAGAACTAGCTGTCATGGAGTCAACTCTCACGACCAGGAACTCTGATTTGGCGGCCCTGCAAAATAATTTGAAGGAACTAGAGGAACTACGAGAGATGAAAGAGGACATTGACCGAAAGAATGAGCAAACAGCCAACATTTTGAAGATGCAAGGGGCTCAGCTAGCTGAGATGGAAGCGCTTTATAAGGAAGAGCAAGTTCTGAGGAAACGATATTTCAACATGATAGAAGATATGAAAGGAAAGATTAGAGTTTATTGTCGGCTTCGACCTCTTAATGATAAAGAAATTATGGAAAAAGAGAAAAATGTGCTTACTAGTCTAGATGAGTTCACAGTTGAACATCTATGGAAGGATGATAAGCTGAGGCAACATATGTACGATCATGTATTTGATGGCACTGCCTCCCAGGAAGATGTTTTTGAAGATACACGGTATCTTGTCCAGTCTGCTGTAGATGGTTATAACGTATGCATCTTTGCTTATGGTCAAACTGGTTCTGGGAAGACATTTACAATATATGGATCTGAGGACCACCCTGGATTAACACCTCGTGCAATTGGAGAACTTTTTAGGATTTTGAAGCGGGATAGTAACAAGTTCTCATTTTCTTTGAAGGCTTACATGGTAGAATTATATCAAGATACGTTGGTAGATCTTCTTCTGCCAAGGAATGCAAAACGATCGAGATTAGAGATAAAAAAGGATACAAAGGGAATGGTATCCATTGAAAACGTTACAATAGCTTCTATCTCAACATTTGAAGAATTAAAAAGTATTATTTATAGAGGATCGGAGCAACGGCATACTTCAGAGACTCAAATGAACGAAGAAAGTTCAAGATCACATTTGATACTTTCAATTGTTATTGAAAGTACCAACCTTCAGACGCAATCTGTTTCTAAAGGGAAGCTTAGTTTTGTTGACCTTGCGGATCAGAGAGAGTGA 2028 38.95 MGTSDWNSLLERFVPRQIAITRPKREWELDILSRFRSMEHLTKDDARQQFLRILRTLPYGNSVFFGVRKIDDPIGLLPGRIILVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLRRYSKARSAAVGSMLGDSSCNLKTQSVEAYEKRVQDLSKGIEESKRNAEQLLKELHEKNKQEVVMQEELEALKESLRFEKQNLAEATHNLERLRSQYDEKDNEHQIMLTERRSLEAKIAKLSTMMLENNGKKDTVGIDEQLLQKLQDELRLRNDELQASEEIRKKLVNEKLFLEQRIFGLEKKTSNEMEHLQISFEHERKVLKLRVAELEKKLEEVTQELAVMESTLTTRNSDLAALQNNLKELEELREMKEDIDRKNEQTANILKMQGAQLAEMEALYKEEQVLRKRYFNMIEDMKGKIRVYCRLRPLNDKEIMEKEKNVLTSLDEFTVEHLWKDDKLRQHMYDHVFDGTASQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDHPGLTPRAIGELFRILKRDSNKFSFSLKAYMVELYQDTLVDLLLPRNAKRSRLEIKKDTKGMVSIENVTIASISTFEELKSIIYRGSEQRHTSETQMNEESSRSHLILSIVIESTNLQTQSVSKGKLSFVDLADQRE* 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 207394 217376 + CsaV3_3G000080.1 Csa03g00008 520913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00008 675 Coils Coil 285 319 - -
Csa03g00008 675 Gene3D Kinesin motor domain 437 675 IPR036961 -
Csa03g00008 675 PRINTS Kinesin heavy chain signature 664 675 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00008 675 PRINTS Kinesin heavy chain signature 514 535 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00008 675 PRINTS Kinesin heavy chain signature 633 650 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00008 675 SMART kinesin_4 440 675 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00008 675 Pfam Kinesin motor domain 448 671 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00008 675 SUPERFAMILY Second domain of FERM 8 59 IPR035963 -
Csa03g00008 675 SUPERFAMILY Prismane protein-like 385 446 IPR011254 GO:0003824|GO:0016491
Csa03g00008 675 Coils Coil 170 253 - -
Csa03g00008 675 Gene3D - 81 157 IPR011993 -
Csa03g00008 675 PANTHER KINESIN-LIKE PROTEIN 46 671 - -
Csa03g00008 675 Coils Coil 342 407 - -
Csa03g00008 675 PANTHER KINESIN-LIKE PROTEIN KLP-3 46 671 - -
Csa03g00008 675 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 672 IPR027417 -
Csa03g00008 675 ProSiteProfiles Kinesin motor domain profile. 442 675 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00008 675 CDD FERM_B-lobe 8 57 IPR019748 -
Csa03g00008 675 SUPERFAMILY PH domain-like 65 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00008 Csa-Chr3:207394 Csa03g02285 Csa-Chr3:20344711 9.74E-47 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00008 - - csv:101206704 1257.66