Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00010 ATGTGTGACGCGAAGGAGAAACAGGAATCTGTACAAGATGTGTCAACTGCTTTAAGTGAAGGAAACCAAGTTAATGCAAAAGAAGATGAGCTCCATGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGATTGATTCACCTGGAACTTGTGTACAGGAAATTGTACCTCTTGAGGATAATTTAGAAAAACCTACAATTCTTCAGCAATCCAATCAAATTTCTGGGCATTCACTTCCCATGGATTATGACCAAGAGTTGGATAAGTCTGTTGCAGAACCTGCTTCCGATGTCAAGTCTGGCCCTGTTGAGTTACCCTCGAGGGATCTAGATGCTGCTGTTTCCAGCTCTCCCCTAGAAACTGTTCAGTCCTCCATAGATGCCAAATCTGAGGCCTCTAAGATGCCTGAAATTAAAACCTGTTCTCTTGATGATGCTTCAACAGTGAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTAAAAGCTGAAACAGAAAATGCCATAGAATTGAAGGTCAATGAAGACATTGTTACTACACCACATAATGGGGATTCAAACATGAATCACTCGTTTCTTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCTTGGAATTCAAACCTCCTAAGTTCTATGGAGAGGGTCTGAATTGCCTCAAGTTGTGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGTCAAGTAGGAGAGTCTTTCAAGCCTCCAAAGACATGCACAACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTTCTTGATTATGAGAGGCATAAAACCAATGGTGGTGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCGATGAGTATTGAAAACCAGGGATCCGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAAGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGACAAGAACTCACTCTCAATGCAGAAAAGGGAAAAACAACTAAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCACTCCATGAAATCAGCACGTACAAAATCACCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTCCGCGAGGAGGTGCGTGTTCAGTCTGATCCGGCAGGACGCTTGGTCATTAGTGGTGACCCTGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACACCAGACTTCTGCCGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1533 43.84 MCDAKEKQESVQDVSTALSEGNQVNAKEDELHDSLSVPAEATPNSCEKEIDSPGTCVQEIVPLEDNLEKPTILQQSNQISGHSLPMDYDQELDKSVAEPASDVKSGPVELPSRDLDAAVSSSPLETVQSSIDAKSEASKMPEIKTCSLDDASTVSHDEPVTPHPVSSCVKAETENAIELKVNEDIVTTPHNGDSNMNHSFLLDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKPSYMEHSMKSARTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGDPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE* 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 231248 236435 + CsaV3_3G000100.1 Csa03g00010 520915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00010 510 Pfam Hsp20/alpha crystallin family 427 507 IPR002068 -
Csa03g00010 510 ProSiteProfiles ARID domain profile. 216 307 IPR001606 GO:0003677
Csa03g00010 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 6 508 - -
Csa03g00010 510 MobiDBLite consensus disorder prediction 68 138 - -
Csa03g00010 510 CDD ARID 221 303 - -
Csa03g00010 510 Gene3D - 407 510 IPR008978 -
Csa03g00010 510 MobiDBLite consensus disorder prediction 69 84 - -
Csa03g00010 510 MobiDBLite consensus disorder prediction 119 135 - -
Csa03g00010 510 SUPERFAMILY HSP20-like chaperones 421 506 IPR008978 -
Csa03g00010 510 MobiDBLite consensus disorder prediction 1 51 - -
Csa03g00010 510 SMART bright_3 217 308 IPR001606 GO:0003677
Csa03g00010 510 MobiDBLite consensus disorder prediction 314 337 - -
Csa03g00010 510 Pfam ARID/BRIGHT DNA binding domain 219 303 IPR001606 GO:0003677
Csa03g00010 510 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 410 510 IPR002068 -
Csa03g00010 510 CDD ACD_sHsps-like 425 505 - -
Csa03g00010 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 6 508 IPR045147 GO:0006357
Csa03g00010 510 SUPERFAMILY ARID-like 210 317 IPR036431 GO:0003677
Csa03g00010 510 MobiDBLite consensus disorder prediction 314 331 - -
Csa03g00010 510 Gene3D - 216 314 IPR036431 GO:0003677
Csa03g00010 510 SMART ARID_2 213 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00010 - - - csv:116402509 1004.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00010 Csa-Chr3:231248 Csa04g02674 Csa-Chr4:25980637 1.69E-07 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00936 . 19 384 ARID Transcription Factor Family AT1G04880 56.2 7.2e-105 377.9
Csa03g00010 . 199 478 ARID Transcription Factor Family AT1G20910 60.5 3.0e-91 332.4
Csa04g02674 . 16 310 ARID Transcription Factor Family AT1G76110 68.2 2.1e-112 402.5
Csa03g00010 . 187 508 ARID Transcription Factor Family AT1G76510 60.5 2.7e-109 392.5
Csa03g02792 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.8 1.1e-267 919.5
Csa07g02313 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 58.0 7.9e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31066 PF00011 HSP20 2.40E-05 CL0190 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00010 Csa_Chr03 FPKM 95.551544 96.452194 130.86409 134.440552 50.644878 52.372116 56.018909 185.697769 175.60878 197.272079