Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00010 ATGTGTGACGCGAAGGAGAAACAGGAATCTGTACAAGATGTGTCAACTGCTTTAAGTGAAGGAAACCAAGTTAATGCAAAAGAAGATGAGCTCCATGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGCGAAAAAGAGATTGATTCACCTGGAACTTGTGTACAGGAAATTGTACCTCTTGAGGATAATTTAGAAAAACCTACAATTCTTCAGCAATCCAATCAAATTTCTGGGCATTCACTTCCCATGGATTATGACCAAGAGTTGGATAAGTCTGTTGCAGAACCTGCTTCCGATGTCAAGTCTGGCCCTGTTGAGTTACCCTCGAGGGATCTAGATGCTGCTGTTTCCAGCTCTCCCCTAGAAACTGTTCAGTCCTCCATAGATGCCAAATCTGAGGCCTCTAAGATGCCTGAAATTAAAACCTGTTCTCTTGATGATGCTTCAACAGTGAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTAAAAGCTGAAACAGAAAATGCCATAGAATTGAAGGTCAATGAAGACATTGTTACTACACCACATAATGGGGATTCAAACATGAATCACTCGTTTCTTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCTTGGAATTCAAACCTCCTAAGTTCTATGGAGAGGGTCTGAATTGCCTCAAGTTGTGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGTCAAGTAGGAGAGTCTTTCAAGCCTCCAAAGACATGCACAACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTTCTTGATTATGAGAGGCATAAAACCAATGGTGGTGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCGATGAGTATTGAAAACCAGGGATCCGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAAGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGACAAGAACTCACTCTCAATGCAGAAAAGGGAAAAACAACTAAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCACTCCATGAAATCAGCACGTACAAAATCACCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCTGGACTACTCCGCGAGGAGGTGCGTGTTCAGTCTGATCCGGCAGGACGCTTGGTCATTAGTGGTGACCCTGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACACCAGACTTCTGCCGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1533 43.84 MCDAKEKQESVQDVSTALSEGNQVNAKEDELHDSLSVPAEATPNSCEKEIDSPGTCVQEIVPLEDNLEKPTILQQSNQISGHSLPMDYDQELDKSVAEPASDVKSGPVELPSRDLDAAVSSSPLETVQSSIDAKSEASKMPEIKTCSLDDASTVSHDEPVTPHPVSSCVKAETENAIELKVNEDIVTTPHNGDSNMNHSFLLDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKPSYMEHSMKSARTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGDPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE* 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 231248 236435 + CsaV3_3G000100.1 Csa03g00010 520915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00010 510 Pfam Hsp20/alpha crystallin family 427 507 IPR002068 -
Csa03g00010 510 ProSiteProfiles ARID domain profile. 216 307 IPR001606 GO:0003677
Csa03g00010 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 6 508 - -
Csa03g00010 510 MobiDBLite consensus disorder prediction 68 138 - -
Csa03g00010 510 CDD ARID 221 303 - -
Csa03g00010 510 Gene3D - 407 510 IPR008978 -
Csa03g00010 510 MobiDBLite consensus disorder prediction 69 84 - -
Csa03g00010 510 MobiDBLite consensus disorder prediction 119 135 - -
Csa03g00010 510 SUPERFAMILY HSP20-like chaperones 421 506 IPR008978 -
Csa03g00010 510 MobiDBLite consensus disorder prediction 1 51 - -
Csa03g00010 510 SMART bright_3 217 308 IPR001606 GO:0003677
Csa03g00010 510 MobiDBLite consensus disorder prediction 314 337 - -
Csa03g00010 510 Pfam ARID/BRIGHT DNA binding domain 219 303 IPR001606 GO:0003677
Csa03g00010 510 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 410 510 IPR002068 -
Csa03g00010 510 CDD ACD_sHsps-like 425 505 - -
Csa03g00010 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 6 508 IPR045147 GO:0006357
Csa03g00010 510 SUPERFAMILY ARID-like 210 317 IPR036431 GO:0003677
Csa03g00010 510 MobiDBLite consensus disorder prediction 314 331 - -
Csa03g00010 510 Gene3D - 216 314 IPR036431 GO:0003677
Csa03g00010 510 SMART ARID_2 213 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00010 Csa-Chr3:231248 Csa04g02674 Csa-Chr4:25980637 1.69E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31066 PF00011 HSP20 2.40E-05 CL0190 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00010 - - csv:116402509 1004.2